NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300029869

3300029869: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-1-W_N



Overview

Basic Information
IMG/M Taxon OID3300029869 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133410 | Gp0290868 | Ga0247698
Sample NameSoil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-1-W_N
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size56391516
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomehillsoil
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Arizona
CoordinatesLat. (o)32.5789Long. (o)-110.8512Alt. (m)N/ADepth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029834Metagenome187Y
F052571Metagenome / Metatranscriptome142Y
F067309Metagenome125Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0247698_1001220All Organisms → cellular organisms → Bacteria3391Open in IMG/M
Ga0247698_1001223All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3384Open in IMG/M
Ga0247698_1002430All Organisms → cellular organisms → Bacteria2113Open in IMG/M
Ga0247698_1006552Not Available1096Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0247698_1001220Ga0247698_10012202F067309MSAHIIGRPHDDLLDVLLGPGAEPEQAFIAGREEGPEEGGGGEDHPLGEEPTEADR
Ga0247698_1001223Ga0247698_10012233F067309MSAHIIGRPTDDMLEILLGPGADPEQAFIGGGEERPEESNDLEARSPDERG
Ga0247698_1002430Ga0247698_10024302F052571MAGWGDDPELERLRGLLEDGWKVVDIAEDPDAPGGPSDTVSLEKDGDRTQCTSDHLAFHRYVEGLKAESDG
Ga0247698_1006552Ga0247698_10065521F029834KIPRSRLRITAYHIVDASPVPWMRSHGRGGRSEPATTPASMSWCCVATVP

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.