NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029902

3300029902: Cryconite microbial communities from ice sheet in Thule, Greenland - THU-2



Overview

Basic Information
IMG/M Taxon OID3300029902 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133355 | Gp0289643 | Ga0247058
Sample NameCryconite microbial communities from ice sheet in Thule, Greenland - THU-2
Sequencing StatusPermanent Draft
Sequencing CenterDMAC, Technical University of Denmark
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size205299534
Sequencing Scaffolds14
Novel Protein Genes15
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium1
Not Available5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCryconite Microbial Communities Around The Greenland Ice Sheet
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → cryoconite hole → cryoconite deposit
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationGreenland: Thule
CoordinatesLat. (o)76.23Long. (o)-68.15Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038474Metagenome / Metatranscriptome166Y
F045483Metagenome152N
F056330Metagenome / Metatranscriptome137Y
F068258Metagenome / Metatranscriptome125Y
F083425Metagenome113N
F083559Metagenome112Y
F088794Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0247058_1001868All Organisms → cellular organisms → Bacteria13270Open in IMG/M
Ga0247058_1002171All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella12114Open in IMG/M
Ga0247058_1002468All Organisms → cellular organisms → Bacteria11175Open in IMG/M
Ga0247058_1003860All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae8107Open in IMG/M
Ga0247058_1006735All Organisms → cellular organisms → Bacteria → Terrabacteria group5111Open in IMG/M
Ga0247058_1009657All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium3710Open in IMG/M
Ga0247058_1010649Not Available3382Open in IMG/M
Ga0247058_1011257Not Available3214Open in IMG/M
Ga0247058_1012371All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae2936Open in IMG/M
Ga0247058_1014007All Organisms → cellular organisms → Bacteria2611Open in IMG/M
Ga0247058_1024805Not Available1496Open in IMG/M
Ga0247058_1051686All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales731Open in IMG/M
Ga0247058_1059966Not Available633Open in IMG/M
Ga0247058_1060834Not Available624Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0247058_1001868Ga0247058_10018687F083559MNDCAVSDALTHPPSSRPPRPALVDLHILPHTIHEFGVEARKAGKSWEAAFNGPIQSWEDPETQQATYGVTVRLSRIKDPFTRELYSTNILFYLPEDAMHGMHNVYDMAQRFPFTRIRGPRTAPPLCPPRAGMLWYDANPEGVIMEDVRQSPAMLPDGRPGFFVTGQGYRGKVVLPDGLFIHDVGVYGGYLDPLERPAQLELQHLFGGIEFVPGKTGTQEDLFLTELGDGVWVKGIVGNAVDELHVESYKNSVRLPCPHAGKFLIGARSMSETKLLPYFESRDPNGLGSYALSGFVDCLPKAIGPDVWERVHRVGLGSNFIPSPEIGGHIGLIHVVLERNNPDYPETHDPSYPKIEEQYEGWVVWLDFDESGTPHVKSCLRALTPDDVPRCYQGAGELFDTKRVAFPISLYRIGDNLRVGYGWGDRALFQAEYDYQTVVRHLAA
Ga0247058_1002171Ga0247058_10021711F083425MSTTRTGHDFDTQSLATTGARAILRAETIAAWLSTEELEEVEAAAKRSGKSLAEWLRDTALVGA
Ga0247058_1002468Ga0247058_10024686F083559MDNVVQLQNTVGPSGSHRMDIIPHTVREFGVEARKAGKAWEAAFNGPIQSWPDAESGALTYGVTVRLSRMKDPVSRELYSTNILFYLPAGEMHGMHNVYDMAQRFPFTRIRGPRTSVPHCPQREGRLWYDANPEGVIMEDLRLTPAALPDGRPGFFVTGQGYRGKVMMPDGRFVHDVGVYGGYLDTEERPGQLELQHLFGGIEFGATFTDDDAGRMLAELGEGIWVKGITGNGAEGTHVESYKNSVKLPCLDGRKTLIGARSMSETKQIAYFESQSADGLSGFRMGGVIDGLNRALGLEIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPDYPETFDAVHPGINEQYEGWVVWLKFDADGRPVIEACVRAITPDDVPAGYEGAGELFDTKRVAFPMSLYRIGECLSVGYGWGDRALFQADFDYATVTAQLSSHGRS
Ga0247058_1003860Ga0247058_10038602F045483VTETWRQSTPTAKPRRLVSGLSVLGFSLLVLTGCAVPGGYDVNSLHLQPEAALVYPGSTDVHTNYYNGSPGNYVSKGAVASIGNLATTVHTQLEVFAFFSKTVTADGWTQNGKSDQETTPEGLPASTISWGKQSLHLSYSVEAWTEGETTKYWTRISSDE
Ga0247058_1006735Ga0247058_10067355F056330MPTDALLALQASVTKAATFNGAALILATGTPRRGLKARVIYSAATSTTTNACTFSLDVSYDAGSTWNSDFYQPIALALTTTAQSGEIFIPFEVSPTSVVNGIQIRLTATVSGGGVATITYQGDISLARP
Ga0247058_1009657Ga0247058_10096571F045483VTETRRQSTPTAKPRRLFSGLSVLGFSLLVLTGCAVPGGYDVNSLHLLPESGLVYPGSTGVHTNDYGGSPGNYVSRGAVAATGKSATTVHTQLEVLTYFSQTLAADGWMKTREDDTATTPEGFRAKDISWVKNSLHLSYLVEVWTVGETTQYLTQLNANE
Ga0247058_1010649Ga0247058_10106492F083559MNTAATTTEFSSPISEPSYDDFHVMEVIPHTIHEFGVEARKAGKSWEAAFNGPIQSFEEPATGQSAYAVTVRLSRLKNPVTRELFSTNLLFYMSHEEMSGMHNVYDMARKFPFTRIRGPRTLVPHCPPRDGRLWYDANPEGVIMEDLRLTPTTLPSGRPGFFVTGQGYRGKVTSPDGRFIHDVGVYGGYLDPLERPGQLELQHLFGGIEFAPYRAGGEENPLLTELGEDVWVKGIGENTLGLPSVASYKNSVRLPSQDASQILIGARSMSETKQIAWFESRSADGLSGFRLGGVIDGLHRALGLQVWDRVHRVGLGSNFVDCPELGGFIGLIHIVMEKNNPAFPETLDPIHPGITEQYEGWLVWMTFDEKGVPMIKACVRAITPDDVPLGYCGAGELFDTKRVAFPMSLYRRGNALQAGYGWGDRALFQAEFDYETVTARLSKHCRN
Ga0247058_1011257Ga0247058_10112575F038474QPCEYTECACVVTGAVEGASYCSDICRDRDGQSEEMEVGCECGHPPCDTD
Ga0247058_1012371Ga0247058_10123716F045483MAKPRRLFFGLSVLGISLLLLTGCVVPGGYDVNTLHLLPESGLIYPGSTDVHTNNYGGSPGNYVSKGAVAVTGKTATTIHTQLEVLAYFSQTLAAGGWTQTRADDTATTPEGFRAKDISWVKNSLHLSYLVRTWTVGQTTQYFTLLSANE
Ga0247058_1014007Ga0247058_10140071F045483VTETRRQSTPLANPRRLFSGLSVLGLSLFVLTGCVVPGGYDVNSLHLQPESGLVYPGSTGVHTNNYGGRPGNYVSKGAVAVTGKSAIATHTQLEVLAYFSQTLAADGWTKIGENDRGTTAEGIPSKDIAWVKNSLHLSYLVVVWTVGETTHYDTQLSANE
Ga0247058_1014007Ga0247058_10140074F045483VTETRRQSTPLANPRRLFSGLGVLGLSLLLLTGCVVPGGYDVNSLHLQPESGLVYPGSTGVHTNNYGGSPGNYVSKGAVAVTGKSATTVHTQLEVLAYFSQTLAADGWTKIGEDDRGTTPEGIPSKGIAWVKDSLHLSYIVTVWTVGETTQYLTQLSANE
Ga0247058_1024805Ga0247058_10248051F083559MNTAVSCLDTPNYSTDLMAIIPHTVREFGVEARKEGRAWEAAFNGPIQSWLDAETEQMTYGVTVRLSRLKDPVTRELFSTNLLFYFAEAEMHGIHNVYDMARTLPFTRIRGPRTPVPVCPARSGRLWYDANPEGVIMEDLRLTPTTLPEGGTGFFVTGQGYRGKVMLPDGRFIHDVGVYGGYLDPAERPKQLELQHLFGGIEFGAMTDDRLLTELGDGVWVRGIAESAEGSPHVESYKNSVRLPSVDSHRTVIGARSMSETKQIAYFESRSADGLSGFRLGGVIDGLHRALGLQIWDRVHRVGLGSNFVECTELGGYIGLIHVVLEKNNPEFPETLDPVHPGIDEQYEGWVVWLTLDEDGVPSIKACVRAITPDDVPTEYQGRGELFDTKRVAFPISLYRIGNALQVGYGWGDRALFQAEFEYGVVIDQLF
Ga0247058_1051686Ga0247058_10516861F068258VSLGANHAPGEASECRGDEPDKQMEAREMGLTGMGFNSVAIAAGAIMYWALTFQGHGFRFSTVGVIFMVVGAIGLVISTIVYATSRRPAGGGHHTYDREATDAQGRTAEVHEEVR
Ga0247058_1059966Ga0247058_10599661F088794GGIDLPLVCSPSQVAPLLGRSDHAIRDDCMAGVIPTLPRAGGSGAHHRIATARLLDQIGIPYQIGIPYEIVASETIAP
Ga0247058_1060834Ga0247058_10608341F045483VTETPRQSTPLAKPRRLFSGLSVLGLSLFVLTGCVVPGGYDVNSLHLLPESALVYPGSTDVHTNDYGGSPGNYVSRGAVAATGKSATTVHTQLEVLAYFSQTLAADGWMKTREDDTATTPEGFRAKDISWVKNSLHLSYLVEVWTVGETTQYLTQLNANE
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