NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029934

3300029934: Human fecal microbial communities from mother in Denmark - 53_M



Overview

Basic Information
IMG/M Taxon OID3300029934 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193747 | Ga0169760
Sample NameHuman fecal microbial communities from mother in Denmark - 53_M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size124443021
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria1
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F062845Metagenome130N
F087336Metagenome110N
F088914Metagenome109N
F101355Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169760_115976All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1170Open in IMG/M
Ga0169760_118797All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales994Open in IMG/M
Ga0169760_121438All Organisms → cellular organisms → Bacteria870Open in IMG/M
Ga0169760_125682Not Available724Open in IMG/M
Ga0169760_129012All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium641Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169760_115976Ga0169760_1159763F101355MIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKNFFHMFFFSFLKFI
Ga0169760_118797Ga0169760_1187972F088914RKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNSGKFIVFSAWYAAKALEMDVK
Ga0169760_121438Ga0169760_1214381F087336DTPISSSMHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLVEQRQVAFLGIAFQILPLKSKQKRAP
Ga0169760_125682Ga0169760_1256822F026489GRECSLLTPKENQKSASDFDALEPRKRGCTPLLTPKQWATPEKTEDSRLFGVKIF
Ga0169760_129012Ga0169760_1290121F062845MEKTPFILHEKFRSDNNEQRKEHFQKEFERYIVDGLSNTVPSKSCAXFGILEFEE
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