NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029946

3300029946: Baboon gut microbial communities from fecal samples in Kenya - M08



Overview

Basic Information
IMG/M Taxon OID3300029946 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118445 | Gp0134448 | Ga0116648
Sample NameBaboon gut microbial communities from fecal samples in Kenya - M08
Sequencing StatusPermanent Draft
Sequencing CenterDuke University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size51590131
Sequencing Scaffolds3
Novel Protein Genes3
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBaboon Gut Microbial Communities From Fecal Samples In Kenya
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Baboon Gut → Baboon Gut Microbial Communities From Fecal Samples In Kenya

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
Location
CoordinatesLat. (o)2.717Long. (o)37.1Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052660Metagenome142N
F092227Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0116648_105838All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1341Open in IMG/M
Ga0116648_112815All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii796Open in IMG/M
Ga0116648_115651All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales695Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0116648_105838Ga0116648_1058382F092227MNEQKHKRWLRIGCLLLAGVFALSLLGSVIMMLLY
Ga0116648_112815Ga0116648_1128152F092227MKEQKQKRWLRIGCLILAGVFALSLLGSVVMMLLY
Ga0116648_115651Ga0116648_1156511F052660MRILRVLPENTPEKIGQERAGIEWTVVKSKIRLCIRNRSYGRFLHGGILMGIALPIPSHRAKSHDFACWWPAAAGHSRSADALPGKSNS

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