NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300030497

3300030497: Agave microbial communities from Guanajuato, Mexico - Mg.Sf.rz (v2)



Overview

Basic Information
IMG/M Taxon OID3300030497 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053055 | Gp0104148 | Ga0268252
Sample NameAgave microbial communities from Guanajuato, Mexico - Mg.Sf.rz (v2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size426598694
Sequencing Scaffolds13
Novel Protein Genes15
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha4
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta2
Not Available4
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Chenopodiaceae → Chenopodioideae → Atripliceae → Chenopodium → Chenopodium quinoa2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAgave Microbial Communities From California, Usa, And Mexico
TypeHost-Associated
TaxonomyHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Plant → Plant surface

Location Information
LocationGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004081Metagenome / Metatranscriptome454Y
F035162Metagenome172Y
F039456Metagenome163Y
F060565Metagenome132Y
F075601Metagenome118Y
F076270Metagenome118Y
F079524Metagenome115Y
F085043Metagenome111Y
F088163Metagenome109Y
F102440Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0268252_1046576All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha1317Open in IMG/M
Ga0268252_1075294All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta957Open in IMG/M
Ga0268252_1119739Not Available695Open in IMG/M
Ga0268252_1132549All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha649Open in IMG/M
Ga0268252_1138495Not Available630Open in IMG/M
Ga0268252_1142536All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta618Open in IMG/M
Ga0268252_1150342All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha596Open in IMG/M
Ga0268252_1172328Not Available544Open in IMG/M
Ga0268252_1183271All Organisms → cellular organisms → Bacteria522Open in IMG/M
Ga0268252_1185325All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Chenopodiaceae → Chenopodioideae → Atripliceae → Chenopodium → Chenopodium quinoa518Open in IMG/M
Ga0268252_1187200All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha515Open in IMG/M
Ga0268252_1192876Not Available505Open in IMG/M
Ga0268252_1194644All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Chenopodiaceae → Chenopodioideae → Atripliceae → Chenopodium → Chenopodium quinoa502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0268252_1046576Ga0268252_10465762F102440MGRNTGRGKVAYSWISPDPAKAGPTLGVVVVVVVFSVLIF
Ga0268252_1075294Ga0268252_10752941F102440MGRNTGRGKVAYSWISPDPAKAGPTVGVVVVVVVVSSSS
Ga0268252_1101683Ga0268252_11016831F079524DYELWMLIKSGPLIPTKVIEDGSKVHKKPEEFNADDFKMM
Ga0268252_1119739Ga0268252_11197391F088163MYDRFVYCWFVHVNIEPSLVVGWFEVELLSNLRFLWSVLCEEGDRVVNCHNRVDCEAICGLMSCDMKYMNVLCVN
Ga0268252_1132549Ga0268252_11325491F060565MVIIKAYLLPEKEEILNEMSFLLERVTPSIKVLIDNLEFHTKSRSRFGLLSTAYLIAQRFSLL
Ga0268252_1138495Ga0268252_11384951F075601MEYEKYSLEKLQKMFDVEQNPEELNKIMSAISDKYDVMSDDNKETNNVQLEEEIYQQMNLIKLRDLNVLPLEEIRRKLDKKYDKTIVENEINEIGEDI
Ga0268252_1142536Ga0268252_11425361F102440MGRNTSRGKVAYSWISPDPAKAGPTLGVVVVVVVVLSKVIYWL
Ga0268252_1150342Ga0268252_11503421F039456DKYMKIDRAVSEDIYDYLFDMGAGKFLSKKEKKYLLELFEEWDPEYFKQLDEDFDEYPDNEDLADIIGDEGIQNLNNDD
Ga0268252_1172328Ga0268252_11723283F035162MRHLKNYIAEFSQYYYKIGHKTNRSMFYDKLLYPINSIIKEKYIAWLEKVDVIDTLSLRISYLRK
Ga0268252_1183271Ga0268252_11832712F076270PNKSASVRPAVKCCRSMPRCRNCPARQIADERVLQALGLPVDPPLPPHLRGVPPSLHKYEPLLLRSWREREPAA
Ga0268252_1185325Ga0268252_11853251F085043SFKSAXPSLDRSMSLDRKVIGYKTKTVSELIHEDELVKNMTIEICYEVTNTNPNSIYIPTNVCLEEYNKYE
Ga0268252_1187200Ga0268252_11872001F039456MRCENTIFVHSNVFDDYIKVDSAESEDIFDYLFDIGAGKFLSEEGKKYLLKLFEEYDPEHLNQINEDFDEYPDNDGLENIIGDEGMQNLNNDD
Ga0268252_1192876Ga0268252_11928762F004081MEETLELASFRGNDDPSLVAAALACRACLSGEVDWSLLIDDFDAEAICHCRACGYTRAVSLTSEQALRL
Ga0268252_1194022Ga0268252_11940221F039456MAIEFFNIYHQCWALIEKEKTLMHCGNTTFAYSNEFNDYMKVDGTESEDIFDYLFDIGAGKFLSEEGKKYLLELFEEYDPEHLNQINEDFDEYPDNDGLENIIGDEGMQNLNNDN
Ga0268252_1194644Ga0268252_11946442F035162MRHLANYIVEFSQYYNKIGHNETNLGMFYDKLPYPINSIINKKCIAWFERTDVIDTPGSRISSLKKMGQXSMSKSPKAKED
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