NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300030541

3300030541: Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen0, Rep 3, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300030541 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118397 | Gp0306430 | Ga0265590
Sample NameMetatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen0, Rep 3, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size43134553
Sequencing Scaffolds3
Novel Protein Genes3
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Anaeromyces → Anaeromyces robustus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDetermining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: California
CoordinatesLat. (o)34.4149Long. (o)-119.841Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046107Metagenome / Metatranscriptome151Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0265590_105418All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix1948Open in IMG/M
Ga0265590_118184All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Anaeromyces → Anaeromyces robustus852Open in IMG/M
Ga0265590_122932All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix652Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0265590_105418Ga0265590_1054182F046107MYFGKLYYAGILPFLSNKKEIKFRSNILKIDSVVSTKLSPDSSFIELLGRESPFVVIDDNPVFSLCLISTTSTLLVKFDILQY
Ga0265590_118184Ga0265590_1181842F046107LYYAGIFPFLTNKKEIKPRSNIFKIDRMVSTKLSPDSLFIELLRRDSPFVEIDDDLVLSLCLISTTSTLLVKFGNLEYLSNNSSNELLMIGIALVKNSAKPTIFGTGDSDELFEK
Ga0265590_122932Ga0265590_1229321F046107PFLSNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSSFVAIDDNPVLSLCLISTTSTLLDKFGILQYLSNNSSNELLMIAT

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