Sample 3300030676

Basic Information
IMG/M Taxon OID	3300030676 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128996 \| Gp0213256 \| Ga0187764
Sample Name	Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 40_T2E_3236EL1 (Eukaryote Community Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 40_T2E_3236EL1 (Eukaryote Community Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	99767510
Sequencing Scaffolds	16
Novel Protein Genes	21
Associated Families	18

Dataset Contents

Total Genome Size

99767510

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	2
Not Available	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	8
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum

Not Available

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales

Ecosystem Assignment (GOLD)
Name	Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Ecosystem Assignment (GOLD)

Name

Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Pennsylvania
Coordinates	Lat. (^o)	40.7982	Long. (^o)	-77.8599	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

USA: Pennsylvania

Coordinates

Lat. (^o)

40.7982

Long. (^o)

-77.8599

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000076	Metatranscriptome	2620	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F001767	Metagenome / Metatranscriptome	638	Y
F003025	Metagenome / Metatranscriptome	512	Y
F004604	Metagenome / Metatranscriptome	431	Y
F014507	Metagenome / Metatranscriptome	262	Y
F022654	Metatranscriptome	213	Y
F034936	Metagenome / Metatranscriptome	173	Y
F045108	Metatranscriptome	153	Y
F048326	Metagenome / Metatranscriptome	148	Y
F054571	Metagenome / Metatranscriptome	139	Y
F057101	Metagenome / Metatranscriptome	136	Y
F058692	Metagenome / Metatranscriptome	134	N
F064392	Metatranscriptome	128	Y
F070138	Metatranscriptome	123	Y
F071953	Metatranscriptome	121	Y
F075673	Metatranscriptome	118	Y
F083686	Metagenome / Metatranscriptome	112	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0187764_1001594	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	548	Open in IMG/M
Ga0187764_1009184	Not Available	974	Open in IMG/M
Ga0187764_1017071	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1474	Open in IMG/M
Ga0187764_1026116	Not Available	711	Open in IMG/M
Ga0187764_1036005	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	715	Open in IMG/M
Ga0187764_1047849	All Organisms → cellular organisms → Eukaryota → Sar	594	Open in IMG/M
Ga0187764_1057808	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1523	Open in IMG/M
Ga0187764_1068699	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	649	Open in IMG/M
Ga0187764_1072343	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	752	Open in IMG/M
Ga0187764_1075576	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1107	Open in IMG/M
Ga0187764_1084400	Not Available	609	Open in IMG/M
Ga0187764_1085612	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	516	Open in IMG/M
Ga0187764_1087616	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	897	Open in IMG/M
Ga0187764_1102948	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1019	Open in IMG/M
Ga0187764_1104754	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	559	Open in IMG/M
Ga0187764_1112517	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	622	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187764_1001594	Ga0187764_10015941	F034936	PRHFLMAMAKSNSEAGADFVKNSKVGSASGFMVVAGSILAIPHKTGTKMKIQTAPRFNGASEYNDSFKEIPHCYASMDKKPLIRYSANATRSRLAVEDAPVPLKNASTIEFQDRFCVHNRRFVTTHKNYYTGEMPDMRSNPGMIADSTKLKRMLQEK
Ga0187764_1009184	Ga0187764_10091842	F058692	MGYARKEGSSFTPGQRKRLNVVAITINILAPWLLFCGIFAALSFQLHYYHPALAWSCAGAGLVLAAVCAFLAHRSRMQEQDPTWCTFAAMACAPPCVAIGIMLGYLAATVLAATLGDTNYWYHMQPYYDIENINSYPDVSPARERGQQLMDAGRVYFEDGASLDVSKSMSFKNLERYCVAPITSGAAPLSSYDFWAVGVNCCGGARGDFRCGEYNNPKARAGLRLMRDDQRPFFRLAVQQAEAAYNIKASHPLFFYWMQDPVAETMSYKA
Ga0187764_1017071	Ga0187764_10170711	F001767	FGSRFRLSRFTCLRKFGISDSGMATRAPLLGEKKQAHSKASIFYGADEYLEELKKKYAHDHEIAAMKNLLPGEGDPNAAGVAESKDKMLKVEKNNENRSLKTNRLFPTPNKPDPMPHNLAFLFTKITPEQMMYMWNVLTFIFLTQCAMIVAYCAALAMFPGMWWTCTLCFGIPFSYVAIQNIYIDHDVMHGATFPVYEFQKFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWSSNWYKYILTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGPGGKCNKEFWSKWVPRRVKHNSFVLCLWALVWLLGTYPLGRPLSEGWRFVFTVSFFARVGFSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNIMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGSRAL
Ga0187764_1026116	Ga0187764_10261161	F014507	AQSSDKMLSVQKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFFTQVLMVIGYCAALACFPDFWWTCTLCFGIPFAYIAIQNIYIDHDVMHGATFPVYEWQRFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWVPRRIKHN
Ga0187764_1026720	Ga0187764_10267201	F000241	SPRVASCAPPAYFAMARPTLLPAVAVLAGVYSLASFCFVGSPQTPRDCSRVPARVSAEYLERCGPKDSDVPFNAGAASGAGATVEFKKRPFGILRYQPGEGMKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVQSINGMNVQNEDFGKIMDMLDDEVADPRFSKSTALALDKQGGRMAEPVEAPLSVVFSSIPGYVYKGAQLTEDGQDGFAR
Ga0187764_1036005	Ga0187764_10360051	F054571	APDAARYALDETFQSWDELTGFWLDTSRAFDRIERFCASFLEGTLEASHESAELPPTYRWPGPGSVHEVVWKTFRESVYRTEKDVLLELYSPYRPQHRTHLMVLELVAEALGNLSTLKVARMDTANNYVLPEFGLKDKEKASSFYFVAAAPEKHRRPRRLATKLGRPEELPAQLLRFVHRETRSQEWDFQDRSAWANQEAQRRIRRLRALEKDYEKKMQDEWVQKEMEEFERYKRLGK
Ga0187764_1047849	Ga0187764_10478491	F003025	WMHFPDEGAGGKCNKEFWSKWVPRRIKHNAFVLGLWTCVWLLGTYPLGRPLSEGWRFMFAVSFFARVGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNIMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGK
Ga0187764_1055669	Ga0187764_10556691	F057101	RQDTKAQDIEKLYEVLEKARSPTGLLTVQIGKMECGQFVGKVKPDKDVERIARKFKLDDHVSSKITELKVWRKRNGEEERAMKDLERIEFHLRFAKRPNALCTLLVGKLLEGEVDELPDLTNAEKIMTDFKLDEDACSKMREIIEKRSADEERVLTCVRKQLKSASNASSMLCKIARTLIDGGDLPDPPERPPKGKGGGKDGGKEDGERGERRDRDGGDRHHDRDRGRRD
Ga0187764_1057808	Ga0187764_10578081	F064392	KLSVQNGRGLGQRAFECRRMAEPDDPLVINVVGRHKERENQDLQGEYHMIGMVHGRPAYRKPGTRTVIRYWPVADRWLIDREGVQESDICNAYAEQGGARHPAVEELVWRVWESQHRQHVRDPEFLVTAAPNTIQVLGRAAGKENWALNGEYKLIGLHQGKVAYQKAGKFKHAIRYWRVGDRWLIDLEGLRDVDICNAYADAQSTSYPGEIRLQWHIWDSTRQRHTLDSSLCTLVTPSVIEVVGRESPKENTAMNGSYHLVGLHAGQPAYMKTDGSGHAIRYWPREERWLIDLDGLRDTEICNAYAEAGGTGAHMHPGHLNLVWHVWETSRGRHLTDPAVRSFVAPHFVRISGRDPYKENSTINGDYELVKIVEGKPAYKKADADHVIRFWPAEERWIIDLEAGFHGGDVANSFADAKGAENPGNSELLWYVWETSRGRHVPDEDVIADAVWLPPVDWSKVPGVSD
Ga0187764_1064881	Ga0187764_10648811	F000076	LKRQKGSNSQPSLAPPFPCWCTMAEEEGQEVIFTENTAPDREIWDEKGGLIEKGAAEIAERDQDHVPEVKVLTTLGMFAVPVTAETTIGEIRQKVQEWKPEYSLEQIELVCKDKDAWGPLFNKTSRPRDDDETVESLWSDWDIPRRMMQVALWIKEKNEETGEWESTFWKMLEESKCDDWSFQGHTI
Ga0187764_1066694	Ga0187764_10666941	F070138	SRCGIGLGQLPPDTMTAAEAKFYRDGYTHRTVLFDSMQDAKAEYGGALNFSAYRQGRDRQYLGVNGKNYYAKPWGNDSSNIQAVINGPSYWKRVYYRENIAARFAREDAEAAERKAQAEIAEALSTGAGEAPPRRSQSESALQKPKTLDAKDTYAPIKENMKPFVEKQGKPRIRAMEAGERLHFFNTLHNKYHMKAGGKNLEWNVSKQTHRSTKNELNWILSNYFRTDSHAVLKGAGHD
Ga0187764_1068699	Ga0187764_10686991	F075673	STAGEVAATGWSERFGVHMGLQQQISSYRESFSISRQARQGILAGAWAGAAGLWVRNFSWNFAFFEWKRFLHNAVDNSPANAPAWFEAHLNWLRSLEKKNQANVLTFEAATLGTYLTFFNMAGDNVKTKMQVDPARYPSFSLTVRDIWHKHGLLGFTRGSLFKGIYLILGSTLAIGIQERLTEIMAALFR
Ga0187764_1072343	Ga0187764_10723431	F022654	EAVSKARWPSLAMRLWQLIVLTGPQVTWSDLAEELDTAETCPSCLAKGGGWCTASQRCVEDDTAYCEVESLIGLAGYTDDCGMDEEGQKPRVRPWIDKGVLVSYTFENGSCCMGQGIVSRAYHVLEEYTVLLRDGSKEEVKTDRWNRRKPAKKKDESSEYHNIEFRYFSPRELTVLSGLRPGDLVEAHFAVKKKGAAEDELIKSRRTELAVVINTTVPTVAVNYTTDHIVSVLPRDFVVDTTNATLGPGQ
Ga0187764_1075576	Ga0187764_10755761	F083686	YHAIPYYHPLLKNSLRAMASLHAQQFEILVACTCNCFSSVGMLLFNKLAVQALPLECSLVWLQLFFAAFFMLIFGFPYLHIGSMKDFLRWCMVVPFFTGMLMTSILALKKAPMSLVIVLRSASPLFSLIFERFYPEPLRISGPMVCAIVVMVAGAVMYVSQLHAEHWEGIGWVMLNSIVAVCDRLLQRLLLSKEQHPVDISKTGITVINNMMGLIPVGMAAYFTGEVGQFPYAYANLTGLDKVYIGLSCVIGLSIGFTGIWAQSLISATSFLVMVNANKFVIIGIEAFGMHTKVLTHGQILGASLSILGGILYGKARQQIEQEEEERKQLLPSVKV
Ga0187764_1084400	Ga0187764_10844001	F004604	VGAHAGLAVAFRARAARRAETKPAEKSKYVETVADQRLFEQVYLQYTSEYLKGPLYWHPDKLQGWLPDYPGTPMIKEGKYTSHVIGNLKAFSSNELAFLSMLFFGVGLYGNLQFNFYDPQWAKVDAGGFFNVSYIVESFLLPISFFMHIACYIQRQNGK
Ga0187764_1085612	Ga0187764_10856121	F004604	AWRCRSQRQAAAKESTPTKYTETVADERLFEQVYLQYTSEYLKGPLYWHPDKLQGWLPDYPGTPMIKEGKYTSHVIGNLKAFSSNELAFLSMLFFGVGLYGNLQFNFYDPQWAKVDAGGFFNVSYIVESFLLPISFFMHIACYIQRQNGK
Ga0187764_1087616	Ga0187764_10876161	F045108	AAAPGQVEVPPSTGLGVPEELQDISIAGRDVDTPHWSEKPLEDAQGGLTLEQLDWPNVHGLACASSGFLFLFELVRFCAGQPPSDFECYAAALIYAVIYSSRFDGIRTLAPHFRVTFYATTGWTVYYIAHLLAATNPVIFGHWVYPAGIVFLASSIYFYKHWIERMYRHYVEDRFRPYYVPGLVGLMYFHWLDTVDMLNQWLDPQYWEHVVVDLPDQAWTIADVRLTGLFMSSMALFMITLHNKGVLTGGKNTLITVLFTIFVPALFLTGTHATLQASFP
Ga0187764_1102948	Ga0187764_11029481	F058692	MSKPYSTFQGAYARQSQSAGISPRMDPESMSSFGFGKRKRLNVVSILINVLTPWLVFCGVFASMSFSTHHESPVLAWLAVVAGLAVAGGAGVMARRTKMQDQDPTWYTFAALALGLATVSAAVLGDMNYWYNMQPYYDIENINTYPSVNPAREKGQQLMDAGRVYFEDGTGLDTSKAMAFRNLDRYCVAPIVFGQEPLASYDFWAVGVNCCSGTTADFRCGEFDNPKARSGLRLMREDQRPFFRLAVQQAEAAYNIKANHPLFFYWMQDPVAEVLKYRSDGFKYALIAISTFFAFNILCVAGSVFAFSKLSHEF
Ga0187764_1104754	Ga0187764_11047541	F014507	CTLCFGVPFSYIAIQNIYIDHDVMHGATFPVYEWQRFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWSSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWIPRRIKHNAFVLSLWACIWLLGTYPLGRPLSEGWRFMFTVS
Ga0187764_1110180	Ga0187764_11101802	F071953	LTLGATSPASAVELYQQVFAQGLAKGWTGGAFTARAACPQFLCLGPAYHFYASFSGVGGGVLLTSLTETLIVYGAETKNAQLAMNQKSPGSIPSVHPSWKPFGPGFGIHVFRNVIATAGLRMFCTPCTTAIEKATGNSNSMTTLAGDFAGNVCAACLSAPVHQLYGYTVTTPELRTLPAAEQRERMVSFLKNQYLDTSNGRTRLSGLVPRDLFMRSMYVAVAYTMYSTVERTLVANWPQ
Ga0187764_1112517	Ga0187764_11125171	F048326	SRPFWFKHIRIRSYEVGAMNRFLGRLTLWALLAPLSSAAKYIIGQEERAGAYEVVFDEEKTALDLSKDCYPGKVCPPVVIMVGRQVGTIEVSNCHEGVMYTFVNKGDLDAGVVVQHEGGLYGSKGIPQFGVGTCFCYREGNLMCG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300030676: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 40_T2E_3236EL1 (Eukaryote Community Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences