NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300030714

3300030714: Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-1 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300030714 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0135150 | Gp0323846 | Ga0307925
Sample NameMetatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-1 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size60598806
Sequencing Scaffolds15
Novel Protein Genes18
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2
All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium B3_Pla1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Risofladan, Vaasa, Finland
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → land → soil
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)N/ADepth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016493Metagenome / Metatranscriptome246Y
F029652Metagenome / Metatranscriptome187Y
F031354Metagenome / Metatranscriptome182Y
F036104Metagenome / Metatranscriptome170Y
F038478Metagenome / Metatranscriptome166Y
F043157Metagenome / Metatranscriptome157Y
F048002Metagenome / Metatranscriptome149Y
F053662Metagenome / Metatranscriptome141Y
F059653Metagenome / Metatranscriptome133Y
F061521Metagenome / Metatranscriptome131Y
F067247Metagenome / Metatranscriptome126Y
F069660Metagenome / Metatranscriptome123Y
F088271Metagenome / Metatranscriptome109Y
F091296Metagenome / Metatranscriptome107Y
F091298Metagenome / Metatranscriptome107Y
F104155Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0307925_100388Not Available4814Open in IMG/M
Ga0307925_101912All Organisms → cellular organisms → Bacteria2587Open in IMG/M
Ga0307925_102831All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2170Open in IMG/M
Ga0307925_106772All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1414Open in IMG/M
Ga0307925_107101All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium1377Open in IMG/M
Ga0307925_109220All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium B3_Pla1195Open in IMG/M
Ga0307925_113108Not Available975Open in IMG/M
Ga0307925_113353All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium966Open in IMG/M
Ga0307925_121593Not Available722Open in IMG/M
Ga0307925_122220Not Available710Open in IMG/M
Ga0307925_127380All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria621Open in IMG/M
Ga0307925_130522Not Available582Open in IMG/M
Ga0307925_130762All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium579Open in IMG/M
Ga0307925_135700All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon531Open in IMG/M
Ga0307925_137944Not Available512Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0307925_100388Ga0307925_1003885F059653MNNKAALQSLTEYKNDNLLEKLLLDRGVVTGGTYAAANAKDIDLAAASLYFTLAAHPELKEGAFSIKYSGAQLIAMAKRILKKYDMDEPTVDGAAIW
Ga0307925_100388Ga0307925_1003886F091296MVVERYPHTATINYYTPGTYNTIGIYTEGTLVTIGIVCNIQPNSTKYIIGESGDMIGYSWAVFSPVFAGARSVPKAAKLTFFSKEHIILQLFEYQKHVEMKC
Ga0307925_100388Ga0307925_1003888F031354MKTTFDINDILYPVINTEEVQAILDGGRVYRNKKPLNSELQDIVIIPLSNYVGDEIINDATFMVNCYCKNFNNGAPNITKLRAIAKAVIDEIELYNSAPNYYVFGIVNQILLNDIDQKSMSYVNLRINCFIEK
Ga0307925_101912Ga0307925_1019124F053662LPITRKEFDNSTDTLSAKVVRFLESNPDDAFELEELAEAMGGRQLEVWAILDELKRRKQVSGKCIKGTGYYCVAK
Ga0307925_102831Ga0307925_1028313F091298YDSGWGMSSAAKLRVASSAQVLEYLSIGEPVQDTRVTGLLDLDPLVVSRWLCGEDLRGIYQPIVVRHSVLDGLDLEGRTFYEIVELVGCHVATAHFKHAYFYSSLLVEDCVFEGDFDGRGMQSDGRVVFHNTVFAGWADFSALSVRGRADLVDVSFPGGTNLLRILANGSHALLGREVNLSGCRFRPADIPAGLEATRCGILPFGERSPGGAERQWGELVGREEGDPVDVVGGPLFASHQSGTVDDDDVRTALVLASGCDVK
Ga0307925_106772Ga0307925_1067721F067247VRKLLSIGIVLALLVTFVVPVVVAAQDDECCGYTPPDAVPLPDRITKTLAGSVMWTLLGTMDIMGKAVCATTGQMAANLGGWSDELGVIGVDITATALDGIAGLVEYVFSDALLNMPDLGTSIADLLKGISEVLAGAAE
Ga0307925_106772Ga0307925_1067722F043157MRILDERFRDCICLNIYDRIDSMQMLGELVMIKRAKKLERRIR
Ga0307925_107101Ga0307925_1071012F104155MPNEEVKLAQLDNNAEAIKKLQKFYDDLYAKVIQLMDEFEERGLLIDSGGGKEVVAYNAEVYADHTHPAYVYFRIDEEMTKINNIYVDVYPLPYRSPVTL
Ga0307925_109220Ga0307925_1092202F029652MRLGIIGAIVLGLGIWALKYSWWFVVEIVQGLIALGLVVGGALAIAIAIRRMYRAKQTAE
Ga0307925_113108Ga0307925_1131081F031354MKTTFDINDILYPIINVVPVQATIDGKVYRNKKPLNSELQDIVIIPLSNYNGDEIINDATFMINCYCKNFNNGTPDITKLRAIAGAVITKIEAYNSTSNYYIFDITNQILLQDFDQKSMSYVNLRINCFIEK
Ga0307925_113353Ga0307925_1133531F091298MQVLQYLSIGESIQDTRVTGLLDLDPLVVSRWLCGEDMRGIYQPVVLRHCILDGLDLEGRTCYEMVELVDCTVSTAHFKQAYFYSSLLIEACIFGGDFEGRGIQSDGRVVVHNTIFNGWADFSGIHLRGRADLVNVSFPGGTNLLHVLANGAHKSLGRDIQFNGCRFRAADVPAGLDVARLGITPLGQGDLSGLEG
Ga0307925_121593Ga0307925_1215932F016493MGWFSDKVEKFRQVPNPYFFLHIGARFLFGVGLGLLLATWLPIWTGWVFIGAAVLVAIPSTRIILR
Ga0307925_122220Ga0307925_1222201F048002SQSGPKTWRKSSGVCAGLSELRPMADLLASCPGMTKEHVYYLEQRGYLRPIKQRHGKIERNLFTSEQLQLVEAMWKHRQTGLLPREAYQRALREQSGGQLTIWPEDMAEE
Ga0307925_127380Ga0307925_1273801F038478VAKGILGGRALKGKLQKRRSDLTVELIGFDFGPHKIQIQTAIVKELLEIDEEATTKVFEGLCQSFSDVCLEHHIKVDPVDLFVLVDDELGRGASTKFRDVDDGSFFAEILIPTKDFKVHEYWKYTFLHELGHSWFSIEFSPEDMECGHEDLFIDLVVICTFRKILPPRKRVYQEVKKHRPYFLTQ
Ga0307925_130522Ga0307925_1305222F069660MTAILKLLGLIGGIVPIVLTLITAFETPGFGAQKKKVILDAIDLFYDKVAEGNVMPITKEKLSGIASGFIDIAVAFFNLVGWFKHGNPIVSS
Ga0307925_130762Ga0307925_1307621F036104MGQDGIPISIGIIIAAAILGACFVLGMVLMAVLSA
Ga0307925_135700Ga0307925_1357001F088271CRNTVMEKAEIKRIADYIKDLEEGLVEWDYRGITTQGHLTKLYGIIERLMKATYETKDQELKPLLATLEMKARKCKQCIEARTGVRN
Ga0307925_137944Ga0307925_1379441F061521MSEAQMRIEVERIVNLVAGFGWKKVEEKTEAGRVLLTLAKSVPESEEA
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