Basic Information | |
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IMG/M Taxon OID | 3300031048 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0068071 | Gp0115367 | Ga0074025 |
Sample Name | Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 13 (Eukaryote Community Metatranscriptome) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 177327234 |
Sequencing Scaffolds | 25 |
Novel Protein Genes | 25 |
Associated Families | 19 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 13 |
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Mycenaceae → Mycena | 3 |
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia | 2 |
All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1 | 1 |
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta | 1 |
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Mycenaceae → Mycena → Mycena venus | 1 |
All Organisms → cellular organisms → Eukaryota | 3 |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | forest biome → forest floor → wood |
Earth Microbiome Project Ontology (EMPO) | Unclassified |
Location Information | ||||||||
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Location | Sweden: Dalarna County | |||||||
Coordinates | Lat. (o) | 60.97 | Long. (o) | 15.87 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000358 | Metagenome / Metatranscriptome | 1237 | Y |
F010295 | Metagenome / Metatranscriptome | 305 | Y |
F022801 | Metagenome / Metatranscriptome | 212 | Y |
F033655 | Metagenome / Metatranscriptome | 176 | Y |
F037234 | Metagenome / Metatranscriptome | 168 | Y |
F043718 | Metagenome / Metatranscriptome | 155 | Y |
F044225 | Metagenome / Metatranscriptome | 154 | Y |
F047414 | Metagenome / Metatranscriptome | 149 | Y |
F050101 | Metagenome / Metatranscriptome | 145 | N |
F054554 | Metagenome / Metatranscriptome | 139 | Y |
F056224 | Metagenome / Metatranscriptome | 137 | Y |
F059586 | Metagenome / Metatranscriptome | 133 | Y |
F064333 | Metagenome / Metatranscriptome | 128 | Y |
F068861 | Metagenome / Metatranscriptome | 124 | Y |
F076785 | Metagenome / Metatranscriptome | 117 | Y |
F080696 | Metagenome / Metatranscriptome | 114 | Y |
F083663 | Metagenome / Metatranscriptome | 112 | Y |
F097372 | Metagenome / Metatranscriptome | 104 | N |
F104185 | Metagenome / Metatranscriptome | 100 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0074025_1000181 | Not Available | 595 | Open in IMG/M |
Ga0074025_1004873 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Mycenaceae → Mycena | 727 | Open in IMG/M |
Ga0074025_1011335 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia | 800 | Open in IMG/M |
Ga0074025_1012435 | Not Available | 512 | Open in IMG/M |
Ga0074025_1016605 | Not Available | 612 | Open in IMG/M |
Ga0074025_1019698 | Not Available | 611 | Open in IMG/M |
Ga0074025_1029351 | Not Available | 697 | Open in IMG/M |
Ga0074025_1029902 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Mycenaceae → Mycena | 638 | Open in IMG/M |
Ga0074025_1052719 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Mycenaceae → Mycena | 525 | Open in IMG/M |
Ga0074025_1057341 | All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1 | 1129 | Open in IMG/M |
Ga0074025_1077098 | Not Available | 1491 | Open in IMG/M |
Ga0074025_1104006 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta | 585 | Open in IMG/M |
Ga0074025_1175142 | Not Available | 661 | Open in IMG/M |
Ga0074025_1226134 | Not Available | 648 | Open in IMG/M |
Ga0074025_1227218 | Not Available | 525 | Open in IMG/M |
Ga0074025_1254436 | Not Available | 521 | Open in IMG/M |
Ga0074025_1271625 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Mycenaceae → Mycena → Mycena venus | 591 | Open in IMG/M |
Ga0074025_1273550 | Not Available | 773 | Open in IMG/M |
Ga0074025_1324241 | All Organisms → cellular organisms → Eukaryota | 662 | Open in IMG/M |
Ga0074025_1328185 | Not Available | 953 | Open in IMG/M |
Ga0074025_1328867 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 546 | Open in IMG/M |
Ga0074025_1334758 | All Organisms → cellular organisms → Eukaryota | 601 | Open in IMG/M |
Ga0074025_1361963 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia | 936 | Open in IMG/M |
Ga0074025_1368108 | Not Available | 605 | Open in IMG/M |
Ga0074025_1369603 | All Organisms → cellular organisms → Eukaryota | 612 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0074025_1000181 | Ga0074025_10001811 | F043718 | FLCATLAISTALPINLGGILGGVTGVLDDVLGNVEGVVSGLTSTVSQLLQKVTNLLKIPSGTNPLSFLQDLITKLEGVLSQLLGGAGSGSEIDDLTSGLPIDVNQILAQLTQILNIPKGVNVLTFVQSLLSQLEAILQQVLIIVSQLLKALLGGNLVGDLLGSVNDLKFALLLQKLVGTLTQIVDALTKVNGL |
Ga0074025_1004873 | Ga0074025_10048731 | F022801 | MSAKKSAIQRTSQAVIGMQLMAMRPPHSTSGASQVTVVLPQLFPTTVMGLQLRPMGTSRPVKSRPTRAATAEAPALVDGTTLLQHWFDVGGETGGVVVGVAAAR |
Ga0074025_1011335 | Ga0074025_10113351 | F064333 | AAVKPGWAAMRKGVEVVRPKVEPVIREQLEPIFKLENEIVGKMRESVMSVLEPLLKEHVQPHLGKIVNIIKSPMREAYGDAIGLFDEKISKWEPKGEFEKSFHDLDYFSRSYWQLHPALKKVDDMYEPLWLLREIFTDIYPWSLIWKGHDSVYRHVDNAVYTWEQAMLKERNPELAEPIKRDVIIKYRHDTDIAMMTYYMKILKTIIMPPFEALVHPVAKHIIEPLAEAIPEPFREFIDIKQMFEDLYTGIVEDSINVVLRADGPD |
Ga0074025_1012435 | Ga0074025_10124351 | F043718 | FFLCATLAISTALPINLGGILGGVTGVLDDVLGNVEDVVNGLTSTVSQLLQKVTTLLKIPSGTNPLSFLQDLITKLEGVLSQLLGGAGSGAEIDDLTSGLPIDVNQILAQLTQILNIPKGVNVLSFVQSLLSQLEAILQQVLLIVSQLLKALLGGNLVGDLLGSVNDLKF |
Ga0074025_1016605 | Ga0074025_10166051 | F043718 | FFLCATLAISTALPINLGGILGGVTGVLDDVLGNVEDVVNGLTSTVSQLLQKVVTILKIPSGTNPLSFLQDLITKLEGVLSQLLGSVGSGAEIDELTSGLPIDVNQILAQLTQILNIPKGVNVLTFVQSLLSQLEAILQQVLLIVSQLLKALLGGNLVGDLLGSVNDLKFALLLQKLVGTLTQIVDALTKVNGL |
Ga0074025_1019698 | Ga0074025_10196981 | F044225 | KDYVKDQRSYATQAADYIHDKVDEVVGGVKSKVGLADEAVRHKKEELSEEARHAAAVAAEEAKHAATEAKYSDHTGTAKEKLHDAKRTIKQKAAEFADNHL |
Ga0074025_1029351 | Ga0074025_10293511 | F056224 | MSKVQYVAEEENYSERVATQLPSPQSSSEYNYDLTNTISYNEDETLFFTQMQRCGSFLIPVIENDSHVDDAINQVANYFVESQALGVHSDIDGFFAGNNFECKDAKLEQLNQRKAYLEMALANTLQEMNYL |
Ga0074025_1029902 | Ga0074025_10299021 | F022801 | MQLIAMRPPHSFSGASQVTVVEPQLFPMTVMGEQLNPTSTRTPVRSRPRRAATAEAAELLAGTTLAQHWLEVGGVTGGGGVPFGMAAARVMSTEATTTESLENIFV |
Ga0074025_1052719 | Ga0074025_10527191 | F022801 | MGMQLMAMRPPHSLSGASQVTVVDPQLFPATVMGLQLNPTGTSRPVRSRPRRAATAEAAELEEGTTLLQHWGELGVVTGGGGVPLGMAAARVMSTEAITTESLENMFV |
Ga0074025_1057341 | Ga0074025_10573412 | F097372 | MTENSTINIIKNILAQCNSTVISIGHTEGHFLSSKQLVVLKECVDDLTDLESVADIDTPSSSQITEASTEEDAVRARRLQLAREIRNKQLQLASTSAANRSEINLDIGKLLSERARLDKLIKQFDTIAIV |
Ga0074025_1077098 | Ga0074025_10770981 | F068861 | GAVQLKTSTTLASTFGKVTRYEPWNNANARELLKHHPIAVWEHLDVRLAPRPGIYGRMCTFYGGWAAAGVVTPSTVEEMVSLHDAIDVTYGGTGDPGTIRVQVSCNFDDTMKDLFKGPDNENSRPVFFYCFTETNVIDKPADTDRFMLTFKGKYTLHGRY |
Ga0074025_1104006 | Ga0074025_11040061 | F000358 | IYPPEDGRSCIPPEKLEKAYQKGLIQRPANIGQDEDLDDDMDSKIDQSIKDVWAYYDKKGKGFLTKSEAESFFNDAFEVLALRKGRKPKDLLGPNVSKGQAVSQSIQKLAKGSDRVDFSSFEEFINMSDMDEALAIFTGQTGPIDVKNNVQMVDTNKLSAQARADAGPKPIYRDYPDD |
Ga0074025_1175142 | Ga0074025_11751421 | F054554 | KMLGKLKKGMGEVKASADIETEYLMAKNKNNFDHPAENGVRIKAYLDSFGAADDFVDRIKSWVDKYQDLVSSELKLIEKMNASAQLASISTIFTTFTAAQQNVVQLRQQQLGKVIEYIQTPAKKYISDQTPIKQKIDQANKAWIELRYWRKKGGSHSADEKEAQLAYEAHIEQLFKLFDFSIDAQLAQWVKYFADFEVEFFTNAAGVAPRV |
Ga0074025_1226134 | Ga0074025_12261341 | F083663 | FLFVCVLLCTSGFAYSQTPPAKPVWPDQFIAVFGLNINSSAVKNETSIFYSNWEVKAQLIDYPTKCIPFNDAAVTQACKIWFLPAGITISIPAQKICCMWFPGLGAVAPDFLAAFNYSGTIEGAADQYGVMHQSYLWEGSGFEYWTDVKNGDDIQFRDGPGDTFWNFGSFIASPQDPKLFDLPADCAADCPSSIRQDTSMLRQVRPFSLL |
Ga0074025_1227218 | Ga0074025_12272181 | F050101 | EGSRLVLCDQEGNVQTIDSRLASGDYNLFVSDFVADVRKEINITYNENQSVILIDPEASADEIKYLLCSSVGISLSTQIQLHDNNGRICPISSTLPSGHYTLVVPEVITNLNTVRTLSQESVLVLGGFALGVVVTIGVTSLFRRS |
Ga0074025_1254436 | Ga0074025_12544361 | F104185 | NVIKVWKYDSEKKKVEQYKTINTKGSYPDCIVPNEDESQLLFTSRDKFLEMYDFNTEKTSLHNVSPHITKTNALVYLENMGKISVCDYTSGKICILH |
Ga0074025_1271625 | Ga0074025_12716251 | F059586 | FPLRPSMKFTIAIASLLASVVSAVSLQARQYNDGQLLSPAAGATVASGSEVTIQYHVYDSLSAGTKYILVGFEYSPDDGDHTTYPVGNLSLSSPGSSGLVIKSPVTAPGPGSYNLVIYDVRTAGVAQTLYSVMTVNQTITVT |
Ga0074025_1273550 | Ga0074025_12735501 | F047414 | QENRLPNGFLQFPKKDAGMGMGYDSRMSHSFNKDLSPRMHRDNLILSPLFASNNHGGGFFNNFTPRYFSNMSHNNEGNKLGPDDFLMRPSPTHMDMDHSRFDKAMESLKMEMRNNTAPLMGDHHHQQGLNLDIDLIDDSYLHAPLTKSPNIQFSGSQPTSKCSFKKFGEWSLSPNASYLQRKKF |
Ga0074025_1324241 | Ga0074025_13242411 | F080696 | LGLLESLDLLDDSTTQRIDELAGLGDKLGELVSMVELGNEISEVGGRGFLIDDFNDLLSDGLDLLVLSVAGLSSLSGLLTSESDDEDSEDISVLGLDLTVSINEGLPLSDELAELVSGHIHSVEVSKAGLTLDVFNAELDLSPGISVAVQISERGFNDSSLKSIRSDLCSGGSSYAGLSDDSVSEGSRGLDIVPFLSDEGILDLLLLALLLSELLVFTNS |
Ga0074025_1328185 | Ga0074025_13281851 | F037234 | MLREIDYEKMRKYLELDPETSDLTIIRIIKVRTGYRCKDIRRIMVS |
Ga0074025_1328867 | Ga0074025_13288671 | F033655 | MSLLLLMGLLLGSGSFNNETRKVSLADSLEHFLSILSNSNSVDVDLRLLRNVVQSSFSFLFLDLEGDTSDGSSLDTLHQVSSETSNLISHSLGGENSDITQDDLVEMEVVGELTVVLFDQNLS |
Ga0074025_1334758 | Ga0074025_13347581 | F010295 | LKALSSEGVLSETEVVGLLGSSKGSEFGLMVSKGSSEGSSLSVTKVGGVVFALNTFSDLFSVSLVDDGQVLSNGLSDNLDFAELGGGGATSDLEGSETVKFLLVLFESLDEFVVSGGSKLENSELLVGHLMTWLCCALC |
Ga0074025_1361963 | Ga0074025_13619631 | F064333 | ENEIIGKMRESVMSVLEPLLKEHVTPHLGKVIGIIKSPMREAYADAANIFDEKISKWQPNPEMEKSFRDLDYFARSYWQLHPALRKVDDMYEPLWVLREIFSDIYPWSLIWKGHDSVYKHVDNAVYTWEQAMLKERNPELAEPIKRDVIIKYRHDTDIAVMNYYAKILKLIIMPPFEAAVHPVAKHIIEPLADSIPGPLKEFIDIKQMFEDLYTGIVSDSINVVLRADGPDDAFRSIAITGT |
Ga0074025_1368108 | Ga0074025_13681081 | F043718 | TALPINLGGILGGVTGVLDDVLGNVEGVVSGLTSTVSQLLQKVTTLLKIPSGTNPLSFLQDLITKLEGVLSQLLGGAGSGSEIDDLTSGLPIDVNQILAQLTQILNIPKGVNVLTFVQSLLSQLEAILQQVLLIVSQLLKALLGGNLVGDLLGSVNDLKFALLLQKLVGTLTQIVDALTKVNGL |
Ga0074025_1369603 | Ga0074025_13696031 | F076785 | LFCFQAIQKLFFSEEKFLLFFFLSNCLHQSLNSLDLLHDGLAIDFGQIGGLDFDGNTDELLSDGVLGGSVEHLRLDLGAVGSPDDEEDLVSLTTFSVVRKVEDGISAIVGGELFDEVVIGSARRSSDVDDDLFLIGGKLEKSVTKRVSKLEFLVLVQNIIRNGDSGRHW |
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