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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300031206 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128781 | Gp0267084 | Ga0228563 |
| Sample Name | Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_16mM_3 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 22874790 |
| Sequencing Scaffolds | 21 |
| Novel Protein Genes | 23 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 10 |
| Not Available | 1 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 3 |
| All Organisms → cellular organisms → Eukaryota → Haptista | 1 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae | 1 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 4 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Washington | |||||||
| Coordinates | Lat. (o) | 47.6519 | Long. (o) | -122.3113 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006207 | Metagenome / Metatranscriptome | 378 | Y |
| F006495 | Metagenome / Metatranscriptome | 371 | Y |
| F006882 | Metagenome / Metatranscriptome | 362 | Y |
| F007736 | Metagenome / Metatranscriptome | 345 | Y |
| F024700 | Metagenome / Metatranscriptome | 204 | Y |
| F028443 | Metagenome / Metatranscriptome | 191 | Y |
| F028693 | Metagenome / Metatranscriptome | 190 | Y |
| F030329 | Metagenome / Metatranscriptome | 185 | Y |
| F030342 | Metagenome / Metatranscriptome | 185 | Y |
| F039928 | Metagenome / Metatranscriptome | 162 | N |
| F039966 | Metagenome / Metatranscriptome | 162 | N |
| F044865 | Metagenome / Metatranscriptome | 153 | Y |
| F046205 | Metagenome / Metatranscriptome | 151 | Y |
| F062425 | Metagenome / Metatranscriptome | 130 | N |
| F063286 | Metagenome / Metatranscriptome | 129 | Y |
| F069666 | Metagenome / Metatranscriptome | 123 | Y |
| F087102 | Metagenome / Metatranscriptome | 110 | N |
| F088418 | Metagenome / Metatranscriptome | 109 | N |
| F095000 | Metagenome / Metatranscriptome | 105 | N |
| F102393 | Metagenome / Metatranscriptome | 101 | N |
| F104622 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0228563_101778 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1723 | Open in IMG/M |
| Ga0228563_102121 | Not Available | 1605 | Open in IMG/M |
| Ga0228563_102584 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 1483 | Open in IMG/M |
| Ga0228563_103098 | All Organisms → cellular organisms → Eukaryota → Haptista | 1367 | Open in IMG/M |
| Ga0228563_103648 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 1263 | Open in IMG/M |
| Ga0228563_103663 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1261 | Open in IMG/M |
| Ga0228563_106977 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae | 902 | Open in IMG/M |
| Ga0228563_107221 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 883 | Open in IMG/M |
| Ga0228563_107617 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 854 | Open in IMG/M |
| Ga0228563_108243 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 818 | Open in IMG/M |
| Ga0228563_108953 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 780 | Open in IMG/M |
| Ga0228563_109121 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 771 | Open in IMG/M |
| Ga0228563_109597 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 746 | Open in IMG/M |
| Ga0228563_111173 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 675 | Open in IMG/M |
| Ga0228563_111229 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 673 | Open in IMG/M |
| Ga0228563_113530 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 589 | Open in IMG/M |
| Ga0228563_113800 | All Organisms → cellular organisms → Eukaryota | 581 | Open in IMG/M |
| Ga0228563_114756 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 552 | Open in IMG/M |
| Ga0228563_115775 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 525 | Open in IMG/M |
| Ga0228563_116599 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 504 | Open in IMG/M |
| Ga0228563_116601 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 504 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0228563_101778 | Ga0228563_1017781 | F030329 | LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMCNQFIKANATNSAQVRAQRQDEKRDAQSRGNDEPQWKKKPAAKLKGTSSGEEAKKDQELVLYEFLNMLVRIAFWRANPTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRTSTYIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHANFRELASIFRGYCKSLGEGSSDESAKTMDLEEFHDFVIDVGLETKLHTNKAAAPALYVFEQMKEQFTRADKSGKGLAGPAANSELVLYEFLNVITRVSFYRLNPEYGELTMEHQDTLLPVPQCLDKTLRECILPKAHRDDAAEFRAKAMQLPEVQAALQEGRSRLQAWYATIPLDDNQKVGITQWVS |
| Ga0228563_102121 | Ga0228563_1021211 | F030329 | LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFTKADKSGKGLAGPAANSELVLYEFLNVITRVSFGRINPEYGELTMEHQDTIYPVPFCLEKTLREAILPKAHRDDAAEFRAKTMQMPEVQ |
| Ga0228563_102584 | Ga0228563_1025841 | F044865 | RFAPHHRAHDGERPMAAARAANSGGGGGAKFSLLNRGSSKQDGVATGIFADEGRERGSGGSRNPQLTVLPHASDIKWIDQFPYYPAYRYHSYRSYCGACSSILFLTILLLRFSTSIMDFVNRPPIVTEAREQFERDSTITYRLPRVGVQFRQNGWRPFNDPRYLSIIFEQGVIAMSGNVSYVDLGTHECAFVDRDGRLIADGAMCPLASGDAAGYLQGDFHDVTFAFVRARLARCDNGTDVEGKPLPGMCMMPSEIDRLVYDGVLYMFEQETDMRVDESSPFLRIRQWRREFISRVHLSTDVYFTVRKVTVEPKYIFDAYLPGFKAGDSFTLLHSTQETYTDFEEEAAQYAAFYFRLAPELIRQSRSYTSLFDLFETWGAIVAFLYLVFGLTARSFNAFHFNRQVRGLDLRKLDKGQFTPFGRLIDKSFQMPREFQSMTAD |
| Ga0228563_103098 | Ga0228563_1030981 | F006207 | DVVTCVARTQEGIGIFLWEVAPETEAQASTTRSSMTHANVPLRLAPSITVATTFCMWSKKYLQLAIGTSAGKVIIFNKPQGVMQLHDRKGKHGAPVTCGDWLSDNRLGLASGTRVKISKQLPEEGAQWESYSKFKLSGMLSRVPRKFKDAGAPRMLSFSLSMPPFVAVCIGDNYMLVFGTGTNNNEDVGLTFPDDYGPITGFQWLEDDIVLVSLANGYVTSVDFGQMVRMRRQHGLPEAVKATGTTKVFNEYLTCLTYSPKSHRIACVGDKGFKIIVREDAELEVLVDHTLEYELSIGNCIEHCRWDENGNSLVVTATDGYLWCFDFSNLPVR |
| Ga0228563_103648 | Ga0228563_1036481 | F006495 | MARVAYGATSAADDDDDIRFGSMGYTTELSEDYVTTAQYMARDLDDPYAYEKKPIHYIPGYTGHLPLNRERFGVNYREASAATIAMQKSKGVHHPVTDLSAPAPNYFGKTAIKKLNRSQKFIAADQVAQEEATTNQQKYGHPHAQAPFGVFPVGTAPGAMDYTATSSKVCPNNQADDPSSLASRIAHRRVARIKRNLNGGLFRPDPYDDSVVDDIASLDPRLKILQTRTEYRSDAAACMQTSAEELFDMRDDGAVYSGANALS |
| Ga0228563_103663 | Ga0228563_1036632 | F069666 | AGRMLPGLARLHGYGHVVDVAAVRAADLQCEMVGDWRRPSLLHGAAKDALNSCITGEGEPPLRLTIAAVACAGSGVICGIPVQQLREDSVEVLNLFDRGLHAPAAMLVAYLIPATSVLKNCKLLKNRFDVESAKKLTKMGMEKSIMLSGLTCDRTAANFMNEGLQPADAILIASDLQVVTTLYLSGNNIGTRVPSRSRRR |
| Ga0228563_105662 | Ga0228563_1056621 | F063286 | TVIKADRYDWQKQTKMLPGFSPAQHKLWLKCWSQVTLIDVHHFPLWEKGVHDTLQQHFSALMRIFSHYSKGVSGVDSVADALEIELEEFHDFVKDAKLETRMINFTTMSVIFAKANATNTMEAFEQRMRERRNATVVAEQEVTADKQAVNRPISPKKGAFPDAPIPLPKEEKGKTKREGVEAKKPAKPDNRLTLSEFLGCLVRISFMRANPKHGQYDNISKLVELPSCLRKMLEEVVIPNAKQDQSSLFREELLSNAEVQAAVEEYRERLVFYYNEVNQLTALKGKTDNKLSMETWMDVCRGYLHFSKTKART |
| Ga0228563_106977 | Ga0228563_1069771 | F028693 | CWALCQMTKSASRSQSDIAKIIDLAESRLISTTPGSVPPHFDDGGHLPFGGTIGNTRGPSAFGRRKATRANAIGNPQALLLNFPPQNGPAQLACWERNYKSSIYMDPSAEGERLNTTNWTVGLQGKPTEPSYLALAQQTWGNLRQTACTRPTVAPAFIPPKRDATAEQVAAASYSWKWPEREQRPAAPQIKRPEQLTQSFLEEYEQRPPWLKY |
| Ga0228563_107221 | Ga0228563_1072211 | F102393 | RVAAFLLHPHSRPPTSSTRMMLCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSKPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK |
| Ga0228563_107617 | Ga0228563_1076171 | F095000 | CMRAEVHALTEERNGLRDERDGLRNELQHKHDELAAARDSLDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL |
| Ga0228563_108243 | Ga0228563_1082431 | F006882 | LSRAMLRNMLDGDGQDQYDSGGWCFPKPIPPQNKNDGQTRVLDPMMPVNTNEAFVAGLREYPDEDPRLWQAHKKEWQSVQGGSILTICKLHPSQRPPMVRPEDDNELGQQDVDEFIKKLVETGQPIIKAGGLGKNSLSAMGAKGILGAPKGVESNNFDGQRGFTGLTE |
| Ga0228563_108953 | Ga0228563_1089531 | F030342 | ARDKYGEIKLMSLADGVRGVFQNILGEKTDEAVIRDATYIHAERFDWKLAKPLNGQSLAAHRKWIDCWQNISIADLHYFPLWEKDVFEVMQAVFPDLTNIFAHYAKSIGGSTTAEDAVEMTMSEFKDFVKDVSLETQHLRFDVMMNMFKKANATNSNEAHFQRKAEQGTAAAKEVGAGSTSKALVVATKTKSAASQKDTEMDAELVLYEFVEVLIRISFWRANPYHGIHKLATKLIPLPDCLVQMLQEVVLPNAKRDDSA |
| Ga0228563_109121 | Ga0228563_1091211 | F028443 | YNKKDLTPVPESTQILLEECILPKAKRDTSGEFKKVLASDASTQAVLGEYREKLQNWLRPILRKERTTQNPNPQMTYSLWVALMDGPDSEQKESGKKPPCPKMVGEWSVQQESQITGDERTSRKNQITFKAALSIPQCRWNFLRSQTIEQVEAGDVDADSSAVATLDFTELGECIARCAVNMYEHLMKTFLPSHDRKAMTMADATRSFLRNLLSEKTPEMCMWEATVIKADRYDWQKQTKMLPGFSPAQHKLWLKC |
| Ga0228563_109515 | Ga0228563_1095151 | F087102 | RAAGLAKLRPYLDANMSKESADAFQECCGKLFVLSRVHTSMAPEISFAKVQEITDTLSRACSMASHTAAPLIAGLKRFVEQRILPNGALDHITEQGFRLPADEVGALLDRYRWPHDAKRTQVLHILRKTLEAVAELRTTSDAAVRGSESIEEARLILNHSHERLTRTMESVLDEHATRLDPTLVMGQNLFLAVSRVAQAQEQENVDRLRSRSWPPLYSRVQTVFAEAEARAKAAVKAEAKAKAKVAEEVA |
| Ga0228563_109597 | Ga0228563_1095971 | F039966 | ADPGAQRVRLRAREGEDVEWTHRVAQRASTLKNMMDDAPTEDGVYPLPTIAAAELEMLMEMCEADSMPARLELCSIPELFRLVEGASFLDAPGALNHAQRTLASRLEGKRADELREVLGATDDFGSVEDRLAALAEPAFSPEGQLSLATTGSAGPPALEPQPSLSGVEVTDDAKEAALGMVDVGTLAELKGVSRSWLVLARRVLCSRLSRCEGQSAPTQLAEITDLNIKVLVDAGRPWEAAAAGRMLP |
| Ga0228563_111173 | Ga0228563_1111731 | F104622 | GSLMLAVRAADIMVYCAFIPMILMGWDNLVCPPLKTFLKGEGGTLETLYLMFIALLLIPVTIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVDRVEEFQPLEDDAAQVA |
| Ga0228563_111229 | Ga0228563_1112291 | F039928 | PTFRRTFYAMSYNGREALGLGMKTRDGGIMNGGLKEGSKEDLRRFGTSQIAMESANDIQQRKQPVASMMDSGVTRDEDGIDRVPDPPATLLPYLQQFKIIARGEGIDLNTAMMDAGGTRYGTIPTQKFCAKLTDIYKRFVFSEQLLFSLACAYGTGCEDIRQGGFELVAWKDFVEDVMKQGNDHAQKF |
| Ga0228563_113530 | Ga0228563_1135301 | F046205 | SLSMHQVRMAFMNSQPAEQLQGAKSMGGDAMETLSFDEFVECLCRMGVDKYHKHVPEVAPAQAVEGSFRNILGEATPDEIVIAATYIHAVRFDAETLPLLKDESKFEHRKWLDCWSRMEIMDMYMWPLWEKEVHDILHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVDIGLETKQYKFDVMCNQFIK |
| Ga0228563_113800 | Ga0228563_1138001 | F024700 | LMPPKGTPRVSSLYADMDLTGVVSTLESHWVVLDAELSEIRKDFAVLRALTRKHGEFWMRPMAQLKKLRTQKENLLKEIKFQMELFNLHIQQGRDLCTKLSSVASVIKTPPAQLQSQLAIEVVSPILANSQNPLPVTNAW |
| Ga0228563_114756 | Ga0228563_1147562 | F104622 | GEGGTLETLYLMFIALLLIPVSIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVGPFEEVQPLEGDAALLA |
| Ga0228563_115775 | Ga0228563_1157751 | F007736 | IKPGEAVSAMIANILGDLNEEQVITTATYITAERFTPATEPPKGVSPDAHREWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFYRANPHYGMKSMAKKD |
| Ga0228563_116599 | Ga0228563_1165991 | F088418 | LLVAMLATQHTDFESFANALGGLPNQPPVPMECEPSPSPIDVDTKAIVQQVVNVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKVPAMNKRDKRALAVLELMPVTRDCPQATIALLMSHASTHRSAADIKVLRRCGAQAVKIAEDGLKQPTSATSKVVS |
| Ga0228563_116601 | Ga0228563_1166011 | F062425 | SLSALVLDMGKKGKGKAPAFLETPEALAPFSVQVRDIIATPLGVEATVVGVGSKDGALYLCWPGGIISPASPAPAKAKNKSELEAFGYARRPQSAHIQRDITERWRTQYEQRRYGKPGPKTAAIKLPLGPNGSAGSAAFAAFAASEAAKRPQTAP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |