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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300031409 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128781 | Gp0267076 | Ga0228555 |
| Sample Name | Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_4mM_1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 30781557 |
| Sequencing Scaffolds | 20 |
| Novel Protein Genes | 22 |
| Associated Families | 20 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 4 |
| Not Available | 2 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 2 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 8 |
| All Organisms → cellular organisms → Eukaryota → Haptista | 1 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi | 1 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Washington | |||||||
| Coordinates | Lat. (o) | 47.6519 | Long. (o) | -122.3113 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007736 | Metagenome / Metatranscriptome | 345 | Y |
| F019772 | Metagenome / Metatranscriptome | 227 | Y |
| F024700 | Metagenome / Metatranscriptome | 204 | Y |
| F039928 | Metagenome / Metatranscriptome | 162 | N |
| F039966 | Metagenome / Metatranscriptome | 162 | N |
| F043264 | Metagenome / Metatranscriptome | 156 | Y |
| F043734 | Metagenome / Metatranscriptome | 155 | Y |
| F048057 | Metagenome / Metatranscriptome | 148 | N |
| F048727 | Metagenome / Metatranscriptome | 147 | Y |
| F050807 | Metatranscriptome | 144 | N |
| F054536 | Metagenome / Metatranscriptome | 139 | Y |
| F055416 | Metagenome / Metatranscriptome | 138 | N |
| F068421 | Metagenome / Metatranscriptome | 124 | Y |
| F068493 | Metagenome / Metatranscriptome | 124 | N |
| F074505 | Metagenome / Metatranscriptome | 119 | N |
| F082271 | Metagenome / Metatranscriptome | 113 | N |
| F089700 | Metatranscriptome | 108 | N |
| F095000 | Metagenome / Metatranscriptome | 105 | N |
| F102393 | Metagenome / Metatranscriptome | 101 | N |
| F104622 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0228555_101463 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 2121 | Open in IMG/M |
| Ga0228555_101974 | Not Available | 1903 | Open in IMG/M |
| Ga0228555_107770 | Not Available | 1033 | Open in IMG/M |
| Ga0228555_110077 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 894 | Open in IMG/M |
| Ga0228555_110172 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 889 | Open in IMG/M |
| Ga0228555_110176 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 888 | Open in IMG/M |
| Ga0228555_110756 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 858 | Open in IMG/M |
| Ga0228555_111487 | All Organisms → cellular organisms → Eukaryota → Haptista | 826 | Open in IMG/M |
| Ga0228555_112416 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 788 | Open in IMG/M |
| Ga0228555_112699 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 777 | Open in IMG/M |
| Ga0228555_115824 | All Organisms → cellular organisms → Eukaryota | 666 | Open in IMG/M |
| Ga0228555_116387 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 649 | Open in IMG/M |
| Ga0228555_117500 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 619 | Open in IMG/M |
| Ga0228555_119045 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi | 582 | Open in IMG/M |
| Ga0228555_119573 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 570 | Open in IMG/M |
| Ga0228555_119905 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae | 563 | Open in IMG/M |
| Ga0228555_120483 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 551 | Open in IMG/M |
| Ga0228555_120985 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 540 | Open in IMG/M |
| Ga0228555_121173 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 536 | Open in IMG/M |
| Ga0228555_122502 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 509 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0228555_101463 | Ga0228555_1014631 | F095000 | DAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL |
| Ga0228555_101974 | Ga0228555_1019741 | F050807 | DTCTASVQGRALAGQLAGAMADDDEPTFKPTSAASGKPNIGLNLSAMAEGDMELKATDFLTTARASNEVAITVRGNAKVKAKRILQLLPAILGKERCKAGWRPKGSQIAVACVKDGNCILSLYSRKQMPKPVEVHNLGPGTPTWLDWDCQGTSLAVMVEGIGIFLWEVAPETEAQASTTRSSMTHANVPLRLAPSITVATTFCMWSKKYLQLAIGTSAGKVIIFNKPQGVMQLHDRKGKHGAPVTCGDWLSDNRLGLASGTRVKISKQLPEEGAQWESYSKFKLSGMLSRVPRKFKDAGAPRMLSFSLSMPPFVAVCIGDNYMLVFGTGTNNNEDVGLTFPDDYGPITGFQWLEDDIVLVSLANGYVTSVDFGQMVRMRRQHGLPEAVKATGTTKVFNEYLTCLTYSPKSHRIACVGDKGFKIIVREDAELEVLVDHTLEYELSIGNCIEHCRWDENGNSLVVTATDGYLWCFDFSNLPV |
| Ga0228555_107770 | Ga0228555_1077701 | F089700 | VGLRVAMPAKATAQKTMAGASVFDPTTAKCGLVDGGEADGVASSNEMLELMNNHALLMQSSTGGKSLLMGNNRDADGTVDRSPPPTPEVKKILKEVKRGILRYGIDMIMEFRTQGATQYGTITKSRFHSIITTTFGNQKNFFWDDEKLKILSTHYGTGATDMKLGGQRQVAWMDFCEDLGETDGSYQENAKYLEGYEGFNTLYADAVLADAVVDPMGLKPTDDNPYN |
| Ga0228555_110077 | Ga0228555_1100771 | F054536 | FGKTAIKKLNRSQKFIAADQVAQEEATTNQQKYGHPHAQAPFGVFPVGTAPGAMDYTATSSKVCPNNQADDPSSLASRIAHRRVARIKRNLNGGLFRPDPYDDSVVDDIASLDPRLKILQTRTEYRSDAAACMQTSAEELFDMRDDGAVYSGANALS |
| Ga0228555_110172 | Ga0228555_1101721 | F102393 | FFEPPFVGGRHPYWPPASSTRMILCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMVDLTNSDMTGGNMTDVPVMLDPRVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSKPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK |
| Ga0228555_110176 | Ga0228555_1101761 | F007736 | QGSDIVGDDRVGTEFKCRLSVPQAKAAFVNAQKETGGAVDDTTLDFDELLECIARCGVDKYRAVEQIKPGEAVSAMIANILGDLNEEQVITTATYITAERFTPATAPPKGVSPDAHREWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFYRANPHYGMKSMAKKDNVKTDKSLVEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALG |
| Ga0228555_110756 | Ga0228555_1107562 | F104622 | EFLASLLVFVAGLVADSDLEGSLMLAVRAADIMVYCAFVPMILMGWDNLVCPPLKTFLKGEGGTLETLYLMFIALLLIPVTIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGDGAGAADRVEEFQPLEDDAAQVA |
| Ga0228555_111487 | Ga0228555_1114871 | F048057 | KLRKLREVAAEQAIRQAPPHPFLAGVSDDEPFWRDLPDILQSQILVMIDNGMPTKKNPKPRPVERILWAGTPHTRKRTILLLVLLWAVTLAVPAILLEDLVDEVGGWLALAWALFTVFLFVPRLTRGSREVFALTSQRAIVSRRTMYCSIHSEKFYYSDIASAKLTPHRDGTATVVLTKTKVMYKPTERITFDRIRDVRGAERVLGRMLPGDVAHDAGFPESDEPLPYEPR |
| Ga0228555_111801 | Ga0228555_1118011 | F068493 | SESMSKGLRHMMNRGLSKGWRAWQSMIEALKAKRESMRKSLSQMLNRGLSRGFSAWLEMAIERAVFLQKLRKGLSRIVNRKLALGFDRWIAAFAPRDDPMSKALLYFLNRELSRGWVAWYETWEVLKAKRESMRKSLGHLLHRGLSRGWGAWMEMLEERAAFLQLLSKGVFFMLNRKVATGFAALRSLSPPRTADPMSRALNYFMNRELAHGWAGWQTAWVEQKAKRETMRKSLGHLLNRGLSRGFGAWLEMAIERAVFLQKLRKGVSRM |
| Ga0228555_112416 | Ga0228555_1124161 | F082271 | MASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPSKRSVRKAINSWIEYVYTIRALSRGAAAMRLREERVAFSTWHEHVWSEGERDAALRRAVSSMMQSSVRASLNTWMSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVMMQRRSMVVAVASLIRSMELWGLRAWCAYAELVRMNQEEVETPLRQAIQSMSIRSLRAAMNTWAAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMAS |
| Ga0228555_112699 | Ga0228555_1126991 | F048727 | PVASGHMSFAMAVRFNTTVSAADARLANMSYAQKISEQRLQRSQERSKWYQLSEEERSEILFPAPKKIQTEYYDATPEQTRQVESHFRGEGLHWRPTAESQQVSVKEVIKNDVDNPCNKAPFQPRRPWHAGGGGYDSRLG |
| Ga0228555_115824 | Ga0228555_1158241 | F024700 | RTDSRSSPSPSGGSAGRRVALMPPKGTPRVSSLYADMDLTGVVSTLESHWVVLDAELSEIRKDFAVLRALTRKHGEFWMRPMAQLKKLRTQKENLLKEIKFQMELFNLHIQQGRDLCTKLSSVASVIKTPPAQLQSQLAIEVVSPILANSQNPLPVTNAW |
| Ga0228555_116387 | Ga0228555_1163871 | F039966 | LRAREGEDVEWTHRVAQRASTLKNMMDDAPTEDGVYPLPTIAAAELEMLMEMCEADSMPARLELCSIPELFRLVEGASFLDAPGALNHAQRTLASRLEGKRADELREVLGATDDFGSVEDRLAALAEPAFSPEGQLSLATTGSAGPPALEPQPSLSGVEVTDDAKEAALGMVDVGTLAELKGVSRSWLVLARRVLCSRLGRCEGQPAPTELAEITD |
| Ga0228555_117500 | Ga0228555_1175002 | F043264 | VSTNTSLTSALANPNVGHIVLAPGTYNLSAELNITRSVVLEAAVAGSVVLNAQASYSSQRRVANINPGPSGVVQVIGLNITGGYVSGFSCNAAGCT |
| Ga0228555_118354 | Ga0228555_1183541 | F068421 | RSFDDGSMHLYSSAFRDGKPVDNHGKEIGGMGAKAITAYRRHDTQKGTLEGESATFTPIDEDNATLRYFAATVMKEHERGWVAGPHTVPWNPAPYRQVPYELRGLAVKTNEPWIEDVKANPEMNMATSGFNRLDDGQTDSSALLFQRRKEEDASIAANRGLIPWHDSPVLWRFPSGQAGRSIEYGETASTLAQEYNYMN |
| Ga0228555_119045 | Ga0228555_1190451 | F043734 | ARRCFALYARSAAMMSFFRAKQLGIPAARWGVAAGSIGFFLLYEDLPQLILQTPYGNFPGWTGVAVAFGMMKDPKAE |
| Ga0228555_119573 | Ga0228555_1195731 | F019772 | LRNMLEAGAPISPPSSVPASPVFEWSKIGTDWEADGSTLIASGMLAEERYAVGSKIVRSGKTTFTYTINKVFFPDAHVFVGVAEITDDPENAKTWAFNGPTGNLYIGSKLNEHGQEQRKVHLHAEPEGATVGKQEGMTVDCIVDMDEKKLSFSFNGEEPVDCGITLPDAGVRPWVFMYHEGDSVTLEEAC |
| Ga0228555_119905 | Ga0228555_1199051 | F055416 | LSFSMVMRPVLRDAAARLATTMLRGRHTPHRPPARRLCALQESAAIRCNYPETYAYLKAKRDRHPIEDALEDYTQWTVMGEPLHPKITPIPKPGQPKPVEASSAIKKEETEEEYIRRRCEEFMHKSLSSRRGPGGKMFTIGGGGDAGVAYQVI |
| Ga0228555_120483 | Ga0228555_1204831 | F039928 | VSPTFRRTFYAMSYNGREALGLGMKTRDGGIMNGGLKEGSKEDLRRFGTSQIAMESANDIQQRKQPVASMMDSGVTRDEDGIDRVPDPPATLLPYLQQFKIIARGEGIDLNTAMMDAGGTRYGTIPTQKFCAKLTDIYKRFVFSEQLLFSLACAYGTGCEDIRQGGFELVAWKDFVEDVMKQG |
| Ga0228555_120985 | Ga0228555_1209851 | F074505 | WPVWALRRRPWSMPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLTVRQMVLQHAAEALADKTKELTDVLGLINNDQLVAELDVWLQHRLQRTTRRIVDGSRTAQIASHGWLTACRSRLMRYPNRADERRALLFMRRGALCIRPFLTLRQAIQGR |
| Ga0228555_121173 | Ga0228555_1211731 | F039966 | VRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPPEDGVYPVPMIAAAELALLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQRALATRLNGKRADELRELLGATDDFGSAENRVAALAEPAFSPEGQLSVAAAGSAAGPPALQPQLTLGYAGGAPALQPQPSLSGMAV |
| Ga0228555_122502 | Ga0228555_1225021 | F104622 | SDLEGSLMLAVRAADIMVYCAFVPMILMGWDNLVCPPLKMFLKGEGGTLETLYLMFIALLLIPVTIAQTMFGFGGGSTDLAMSVVGAMDIVAGDVAATADETAEEQGAGDGEGAVDRVEEIQPLEG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |