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Sample 3300031480
3300031480: Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_R6 (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300031480 Open in IMG/M GOLD Reference Gs0132857 | Gp0330677 | Ga0314815 Sample Name Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_R6 (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 12052378 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria 1 Not Available 2
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States Type Environmental Taxonomy Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States
Location Information
Location USA: Pennsylvania Coordinates Lat. (o ) 40.7997 Long. (o ) -77.8629 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F022207 Metagenome / Metatranscriptome 215 Y F051771 Metagenome / Metatranscriptome 143 Y F073679 Metagenome / Metatranscriptome 120 Y
Sequences
Scaffold ID Protein ID Family Sequence
Ga0314815_101874 Ga0314815_1018742 F051771 MQGNMTDGPSHLEPVDDQAVPKPGRRWTWDRLGPHASRVALELFIVFVGVSAAFAVENYRDARQQDLRRLAVYRALDRELTQMAETHGPVFQRQMTEQLTVWDQAVAKGEHPLPPTFRMPRAERPPTGVWDAAVATGSIELIDPELFFELARLYNRAESAGDLYQRYATSAQADVWARLDEGPGAFWQPDGKLRPEIKAHVQRLRDFQDLQGQRVN Ga0314815_103746 Ga0314815_1037462 F022207 RRQPIDDKLIASAPVTTFEGRTALGGIALQPVRLVLLLLVGPREGENDFLEFPSVEEAVAYARELYGERRFQLEGIEDRSGRSVVSYDVLHDRCRAPDRIQERRFG Ga0314815_103783 Ga0314815_1037833 F073679 GRCMASERPEYYRARAAEERHAAACAPTPAIARTHNDLAAMYDRQAREAERERTPEPA
