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Sample 3300031482
3300031482: Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_R4 (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300031482 Open in IMG/M GOLD Reference Gs0132857 | Gp0330675 | Ga0314813 Sample Name Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_R4 (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 10045722 Sequencing Scaffolds 2 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds Not Available 1 All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States Type Environmental Taxonomy Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States
Location Information
Location USA: Pennsylvania Coordinates Lat. (o ) 40.7997 Long. (o ) -77.8629 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F022207 Metagenome / Metatranscriptome 215 Y F051771 Metagenome / Metatranscriptome 143 Y F098404 Metagenome / Metatranscriptome 103 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0314813_13625 Not Available 625 Open in IMG/M Ga0314813_14151 All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff 560 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0314813_11644 Ga0314813_116441 F051771 MQGNMTDGPSHLEPVDDQAVPKPGRRWTWDRLGPHASRVALELFIVFVGVSAAFAVENYRDARQQDLRRLAVYRALDRELTQMAETHGPVFQRQMTEQLTVWDQAVAKGEHPLPPTFRMPRAERPPTGVWDAAVATGSIELIDPELFFELARLYNRAESAGDLYQRYATSAQADVWARLD Ga0314813_13625 Ga0314813_136252 F022207 GRTALGGIALQPVRLVLLLLVGPREGENDFLEFPSVEEAVAYARELYGERRFQLEGIEDRSGRSVVSYDVLHDRCRAPDRIQERRFG Ga0314813_14151 Ga0314813_141511 F098404 MRSFLVCVVLALAIACAAAQQTRPKLSETFESKGFVQIKHNGTLFFGEGWYHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEVIHVAKDKTPVCHTKSLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPDILAYFGRFSAGNEFSYYIEQWKTDKPHSTWFEI
