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Sample 3300031492
3300031492: Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_N_R5 (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300031492 Open in IMG/M GOLD Reference Gs0132857 | Gp0330670 | Ga0314808 Sample Name Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_N_R5 (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 25223767 Sequencing Scaffolds 5 Novel Protein Genes 6 Associated Families 6
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi 1 All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas 1 Not Available 1 All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 21-71-4 1 All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States Type Environmental Taxonomy Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States
Location Information
Location USA: Pennsylvania Coordinates Lat. (o ) 40.7997 Long. (o ) -77.8629 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F010911 Metagenome / Metatranscriptome 297 Y F022207 Metagenome / Metatranscriptome 215 Y F062141 Metagenome / Metatranscriptome 131 Y F073679 Metagenome / Metatranscriptome 120 Y F075461 Metagenome / Metatranscriptome 119 Y F089547 Metagenome / Metatranscriptome 109 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0314808_100404 All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi 6387 Open in IMG/M Ga0314808_103960 All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas 1371 Open in IMG/M Ga0314808_106573 Not Available 923 Open in IMG/M Ga0314808_107754 All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 21-71-4 814 Open in IMG/M Ga0314808_109358 All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes 701 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0314808_100404 Ga0314808_1004041 F062141 MPRGLIFLILVILLLVAGVYFLSQSADEVPVQTIESDITANAATN Ga0314808_103960 Ga0314808_1039601 F089547 VEIALTALSVALTSSIHVSTYVCLDDTVFALSTSDQMAIVRFKDREYRLPRRQSSIAIKYATEEATLYLDGDFAAFVAEDRWPPGCQRLESGESR Ga0314808_103960 Ga0314808_1039602 F073679 MASERPEYYRARAAEERHAAACAPTPAIARTHNDLAAMYDRQAREAERERTPEPA Ga0314808_106573 Ga0314808_1065731 F022207 KLIASAPVTTFEGRTALGGIALQPVRLVLLLLVGPREGENDFLEFPSVEEAVAYARELYGERRFQLEGIEDRSGRSVVSYDVLHDRCRAPDRIQERRFG Ga0314808_107754 Ga0314808_1077541 F075461 MRYTSTTLALAALLGSAACGVKSKTTDMNPAISRTPTCENAIAVFDGRADVTSNYYELAWIEVEGNSVWTTDNQMRDKMKKRAAEVGANGLISNPVQQNKVGVNVLGEALGARTATARASGLAIWMPGENDRTRLACGTR Ga0314808_109358 Ga0314808_1093581 F010911 VASLTHLVLTSTVVGDLVSWSVDTGGHVFPAHGGAADEPYPHVVVDRAGVEWSVREVETPQPWARADRCLVLNSRECVRRLWRYPSNWRHLDADALLDLGTAD
