Sample 3300031641

Basic Information
IMG/M Taxon OID	3300031641 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128781 \| Gp0267077 \| Ga0228556
Sample Name	Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_4mM_2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_4mM_2 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	25776130
Sequencing Scaffolds	18
Novel Protein Genes	22
Associated Families	22

Dataset Contents

Total Genome Size

25776130

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	5
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	8
Not Available	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	2
All Organisms → cellular organisms → Eukaryota	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

Not Available

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales

All Organisms → cellular organisms → Eukaryota

Ecosystem Assignment (GOLD)
Name	Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
Type	Engineered
Taxonomy	Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Ecosystem Assignment (GOLD)

Name

Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Type

Engineered

Taxonomy

Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Washington
Coordinates	Lat. (^o)	47.6519	Long. (^o)	-122.3113	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Washington

Coordinates

Lat. (^o)

47.6519

Long. (^o)

-122.3113

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007736	Metagenome / Metatranscriptome	345	Y
F013862	Metagenome / Metatranscriptome	267	Y
F024700	Metagenome / Metatranscriptome	204	Y
F025010	Metagenome / Metatranscriptome	203	Y
F028443	Metagenome / Metatranscriptome	191	Y
F030329	Metagenome / Metatranscriptome	185	Y
F039928	Metagenome / Metatranscriptome	162	N
F039952	Metagenome / Metatranscriptome	162	N
F039966	Metagenome / Metatranscriptome	162	N
F042124	Metagenome / Metatranscriptome	158	N
F043264	Metagenome / Metatranscriptome	156	Y
F044865	Metagenome / Metatranscriptome	153	Y
F050807	Metatranscriptome	144	N
F061461	Metagenome / Metatranscriptome	131	Y
F068421	Metagenome / Metatranscriptome	124	Y
F068493	Metagenome / Metatranscriptome	124	N
F079587	Metagenome / Metatranscriptome	115	N
F082271	Metagenome / Metatranscriptome	113	N
F087987	Metatranscriptome	109	N
F091182	Metagenome / Metatranscriptome	107	N
F095000	Metagenome / Metatranscriptome	105	N
F104622	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0228556_101393	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	2071	Open in IMG/M
Ga0228556_102814	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1558	Open in IMG/M
Ga0228556_102846	Not Available	1551	Open in IMG/M
Ga0228556_104784	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1210	Open in IMG/M
Ga0228556_105691	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	1109	Open in IMG/M
Ga0228556_107698	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	941	Open in IMG/M
Ga0228556_108221	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	905	Open in IMG/M
Ga0228556_108526	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	884	Open in IMG/M
Ga0228556_110077	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	797	Open in IMG/M
Ga0228556_111158	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	745	Open in IMG/M
Ga0228556_111816	Not Available	715	Open in IMG/M
Ga0228556_112681	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	679	Open in IMG/M
Ga0228556_114343	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	623	Open in IMG/M
Ga0228556_114613	All Organisms → cellular organisms → Eukaryota	614	Open in IMG/M
Ga0228556_115188	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	597	Open in IMG/M
Ga0228556_116528	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	559	Open in IMG/M
Ga0228556_117656	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	530	Open in IMG/M
Ga0228556_118366	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	513	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228556_101393	Ga0228556_1013931	F095000	EAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228556_102814	Ga0228556_1028141	F030329	LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMCNQFIKANATNSAQVRAQRQDEKRDAQSRGNDEPQWKKKPAAKLKGTSSGEEAKKDQELVLYEFLNMLVRIAFWRANPTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRTSTYIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHANFRELASIFRGYCKSLGEGSSDESAKTMDLEEFHDFVIDVGLETKLHTNKAAAPALYVFEQMKEQFTRADKSGKGLAGPAANSELVLYEFLNVITRVSFYRLNPEYGELTMEHQDTLLPVPQCLDKTLRECI
Ga0228556_102846	Ga0228556_1028461	F050807	SLDTCTASVQGRALAGQLAGAMADDDEPTFKPTSAASGKPNIGLNLSAMAEGDMELKATDFLTTARASNEVAITVRGNAKVKAKRILQLLPAILGKERCKAGWRPKGSQIAVACVKDGNCILSLYSRKQMPKPVEVHNLGPGTPTWLDWDCQGTSLAVMVEGIGIFLWEVAPETEAQASTTRSSMTHANVPLRLAPSITVATTFCMWSKKYLQLAIGTSAGKVIIFNKPQGVMQLHDRKGKHGAPVTCGDWLSDNRLGLASGTRVKISKQLPEEGAQWESYSKFKLSGMLSRVPRKFKDAGAPRMLSFSLSMPPFVAVCIGDNYMLVFGTGTNNNEDVGLTFPDDYGPITGFQWLEDDIVLVSLANGYVTSVDFGQMVRMRRQHGLPEAVKATGTTKVFNEYLTCLTYSPKSHRIACVGDKGFKIIVREDAELEVLVDHTLEYELSIGNCIEHCRWDENGNSLVVTATDGYLWCFDFSNLPVR
Ga0228556_103100	Ga0228556_1031001	F087987	QPSMRGKLPFQRLRQDVGGTPEERKLAAERAAKAKKRRQWLQQTFDVRNLDLFGYEPDYTFQGYRSNFGAYISVAVGFAVLLRFTTRILDFMYPTPLINENHLLFARDMSEGFALPTFGFIFKRSGWRPFYDPTYFTFSFQQGTSGRASNSTYVDLGDEPCSFVDAYGRIIEDEARCPAISGEVVGSFFDSRFRFVHVSMNRCHNGTDSQGRTQPGPCRRPDEIDRLIYEGTVTLAISQRDLDTGSKDEYTQLVSIKKQFTRHIHATYDMFFTVRFVTIQPRAFFDEYDVVNMKRQYVVLDRQEASFTDFQAERLGRWNQVDPTYVPKYAGFFFMLSDEKIDQQRMYLTIFDMFEALGGTLCFFYFVLRLVALRWNHVHFTQQIKGLDLRDLNRDMFDQFGRLVDRSFQVPRELQDMHNVANLK
Ga0228556_104784	Ga0228556_1047841	F044865	ERGSGGSRNPQLTVLPHASDIKWIDQFPYYPAYRYHSYRSYCGACSSILFLTILLLRFSTSIMDFVNRPPIVTEAREQFERDSTITYRLPRVGVQFRQNGWRPFNDPRYLSIIFEQGVIAMSGNVSYVDLGTHECAFVDRDGRLIADGAMCPLASGDAAGYLQGDFHDVTFAFVRARLARCDNGTDVEGKPLPGMCMMPSEIDRLVYDGVLYMFEQETDMRVDESSPFLRIRQWRREFISRVHLSTDVYFTVRKVTVEPKYIFDAYLPGFKAGDSFTLLHSTQETYTDFEEEAAQYAAFYFRLAPELIRQSRSYTSLFDLFETWGAIVAFLYLVFGLTARSFNAFHFNRQVRGLDLRKLDKGQFTPFGRLIDKSFQMPREFQSMTAD
Ga0228556_105580	Ga0228556_1055801	F079587	FWTVLEFWTVLDFSRTSEHTPSIRSSSQSTMLSTLALATMIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKMLDAFDKFRAVAALARKDGQETPAQASNASETVNVTAQA
Ga0228556_105691	Ga0228556_1056911	F091182	FPAMGRWNEVESVFYSWEPDEAGRLHWNVLRNRMTGGRLVRVQQAKHTTVSYYKQASRAGEGFGNRSSSRFNSGTVDRVGPGKYSPALATHGALATSSGHSGKLKSTAPRFLKKPQSDAPGPGKYTPRHTLQDGRNEITPA
Ga0228556_107698	Ga0228556_1076981	F028443	GSKYNKKDLTPVPESTQILLEECILPKAKRDTSGEFKKVLASDASTQAVLGEYREKLQNWLRPILRKERTTQNPNPQMTYSLWVALMDGPDSEQKESGKKPPCPKMVGEWSVQQESQITGDERTSRKNQITFKAALSIPQCRWNFLRSQTIEQVEAGDVDADSSAVATLDFTELGECIARCAVNMYEHLMKTFLPSHDRKAMTMADATRSFLRNLLSEKTPEMCMWEATVIKADRYDWQKQTKMLPGFSPAQHKLWLKCWSQVTLIDVHHFPLWENGVHDTLQQHLSALMRNFSHYTKGVSGVYSVADALEIV
Ga0228556_108221	Ga0228556_1082211	F039928	TFRRTFYAMSYNGREALGLGMKTRDGGIMNGGLKEGSKEDLRRFGTSQIAMESANDIQQRKQPVASMMDSGVTRDEDGIDRVPDPPATLLPYLQQFKIIARGEGIDLNTAMMDAGGTRYGTIPTQKFCAKLTDIYKRFVFSEQLLFSLACAYGTGCEDIRQGGFELVAWKDFVEDVMKQGNDHAQKF
Ga0228556_108526	Ga0228556_1085261	F042124	EMSINGPAGGRPSRSPSRSDVAKAASLAEEPLIPPVVRVKNSAKAGRPFSNYQKHQAKTQALKGHTIHITSVGPYISRPEQRNLDDQGLRYRSIHKEAFKPAGLWDKYEPPLGGWGFAAAGFVLPDDLPETAKRFGSFYNTHLHQFRATAPKGNIYM
Ga0228556_110077	Ga0228556_1100771	F082271	MASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCSDGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRSMELWGLRAWCAYAELVRMNQEEVETPLRQAIQSMSIRSLRAAMNTWAAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVN
Ga0228556_111158	Ga0228556_1111581	F007736	ELLECIARCGVDKYRAVEQIKPGEAVSAMIANILGDLNEEQVITTATYITAERFTPATAPPKGVSPDAHREWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFYRANPHYGMKSMAKKDNVKTDKSLVEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALG
Ga0228556_111816	Ga0228556_1118161	F039952	ECGLARKAEVADARKFIAMPSEDEEVQELKQMFSSPTKSKKHRSPARKPAWDSTPLRSRPSALVGLRPVTREPWAIDEDVYNRKFEMRDVGVPDRYLDKTARVKENNSKYVDYLCRFDQKYSEMNGGYNRFDGNPFT
Ga0228556_112681	Ga0228556_1126811	F043264	ANTAVGRIVLAPGTYNLTAELSITRSVILEAAVAGSVILNAQASSSSQRRVVNINPGSLGVVQLIGLNITGGYLSSVVRAAETFNVSHRPDGKMPC
Ga0228556_114343	Ga0228556_1143431	F039966	MTEGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPTEDGVYPVPIAAAELAVLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQCALATRLNGKRADELRELLGAMDDFGSAENRVAALAEPAFSPGGQLSVATVGSAAGPPALQPQPSLSGMAATEDAKEVAL
Ga0228556_114613	Ga0228556_1146132	F024700	ALMPPKGTPRVSSLYADMDLTGVVSTLESHWVVLDAELSEIRKDFAVLRALTRKHGEFWMRPMAQLKKLRTQKENLLKEIKFQMELFNLHIQQGRDLCTKLSSVASVIKTPPAQLQSQLAIEVVSPILANSQNPLPVTNAW
Ga0228556_115188	Ga0228556_1151881	F061461	APFQSVVCSTMPKGIPAPGPWDLPGDVSTLSNEGLAEGESIWVRLATIVRARRLDLRLLMNACDLHNRGMVPIKEFQKGLAYSLGNQWNELECTTAEFKELTDPYLSRVPKKPGDPDPFVKWQEFTTHVQALADQMGSGKAGDY
Ga0228556_115328	Ga0228556_1153281	F068493	KRESMRKSLSHMLNRGLSRGFGAWLEMAIERAVFLQKLRKGLSRIVNRKLSLGFDRWNAAFAPRDDPMSKALLYFLNREIARGWTAWYTAWEELKAKRESMRRSLSHMLNRGLSRGLGAWSEFAVERKAFLQQLHRGLSRMVNRKLANGFASWVEQVEGSESMSKGLRHMMNRGLSKGWRAWQSMIEALKAKRESMR
Ga0228556_116528	Ga0228556_1165281	F013862	ATLGGVAQGGSVIGLLGVGEYYKRLTKSSKALLVLVELLLCALVPFVLSLGPSVLPQLAVVPLTVLWGLAYALPFYIPPGEFAMQIGGKKGTALFTNIFDASGFAASALWNPWASALAKNNDFKTILYSQALFGAISSLTMPLCMYRQMLKEQAAKKKE
Ga0228556_117068	Ga0228556_1170681	F068421	GTVGALSSSGTVTQDRRNKFDKKFDEDQAAWLNDDDRNNDALYHRSFDDGSMHLYSSAFRDGKPVDNHGKEIGGMGAKAITAYRRHDTQKGTLEGESATFTPIDEDNATLRYFAATVMKEHERGWVAGPHTVPWNPAPYRQVPYELRGLAVKTNEPWIEDVKANPEMNMATSGFNRLDDG
Ga0228556_117656	Ga0228556_1176561	F104622	VAGLVADSDLEGSLMLAVRAADIMVYCAFVPMILMGWDNLVCPPLKMFLKGEGGTLETLYLMFIALLLIPVTIAQTMFGFGGGSTDLAMSVVGAMDIVAGDVAATADETAEEQGAGDGEGAVDRVEEIQPLEG
Ga0228556_118366	Ga0228556_1183661	F025010	LGLASATIVLKFMDDVVFATIRMKETFRVAHELFIIYLREMDFDPARALHMGNVFRRGGQDTLLSEARRNAAASFRTCGGTPQLDGAKKSDAKNPKTDTKPNGKSDDSSKKPCPDFNAGRPCKKLKPDGTCVFAHRCNQFVSDKGPGGYCFGVHARCTGCDYDAAKKLRAP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031641: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_4mM_2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences