Sample 3300031642

Basic Information
IMG/M Taxon OID	3300031642 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128781 \| Gp0267061 \| Ga0228540
Sample Name	Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_4mM_1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_4mM_1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	9707276
Sequencing Scaffolds	16
Novel Protein Genes	19
Associated Families	17

Dataset Contents

Total Genome Size

9707276

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	9
Not Available	3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

Not Available

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae

Ecosystem Assignment (GOLD)
Name	Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
Type	Engineered
Taxonomy	Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Ecosystem Assignment (GOLD)

Name

Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Type

Engineered

Taxonomy

Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Washington
Coordinates	Lat. (^o)	47.6519	Long. (^o)	-122.3113	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Washington

Coordinates

Lat. (^o)

47.6519

Long. (^o)

-122.3113

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007463	Metagenome / Metatranscriptome	350	Y
F009790	Metagenome / Metatranscriptome	312	Y
F012945	Metagenome / Metatranscriptome	275	Y
F028443	Metagenome / Metatranscriptome	191	Y
F039966	Metagenome / Metatranscriptome	162	N
F044875	Metagenome / Metatranscriptome	153	Y
F055416	Metagenome / Metatranscriptome	138	N
F061477	Metagenome / Metatranscriptome	131	Y
F063286	Metagenome / Metatranscriptome	129	Y
F068493	Metagenome / Metatranscriptome	124	N
F074330	Metagenome / Metatranscriptome	119	N
F074505	Metagenome / Metatranscriptome	119	N
F087102	Metagenome / Metatranscriptome	110	N
F088418	Metagenome / Metatranscriptome	109	N
F091182	Metagenome / Metatranscriptome	107	N
F095000	Metagenome / Metatranscriptome	105	N
F102393	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0228540_101141	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1210	Open in IMG/M
Ga0228540_101681	Not Available	1022	Open in IMG/M
Ga0228540_102328	Not Available	883	Open in IMG/M
Ga0228540_103141	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	763	Open in IMG/M
Ga0228540_103145	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	762	Open in IMG/M
Ga0228540_103847	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	686	Open in IMG/M
Ga0228540_104337	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	645	Open in IMG/M
Ga0228540_104441	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	636	Open in IMG/M
Ga0228540_104565	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	625	Open in IMG/M
Ga0228540_104755	Not Available	613	Open in IMG/M
Ga0228540_105375	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	574	Open in IMG/M
Ga0228540_105645	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	560	Open in IMG/M
Ga0228540_106100	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	537	Open in IMG/M
Ga0228540_106549	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	517	Open in IMG/M
Ga0228540_106916	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	503	Open in IMG/M
Ga0228540_107006	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228540_100573	Ga0228540_1005731	F009790	GQWRSTNHGYNSKDVVLGAGFAQYTPGLCDDEVYQTVISGSLGNSGGYKKAVVGDGSGRMFGQTADAQQGGYNGAEMDEAMNNDMTGVTEAGYADKIATGFDKVAGDYSTLPRWMQEIFIKLRVLAKSEGIDMERTFQDAGGSRFGTISKRLFISALCIGFQHYRFSPAELDAIADAYGCGSDDIFNGGKMLVAWRDFVNDVLSAEVVAKEYEYSATDTDETDAGYSDGIATGIDKIAGGFDDLPPMLQQLCKDLRRMAKIEGISLEFSLQQAGGTRFGTMPKRHFCSALTIAFHHFKFTPEIYKALCDAYAVGPPDFAEGGKEEVAWRDFCNDVLSSGKDISAHGVQAIDLAAKYDPKKCLLQRLGARGPILERPRIEALQQVRTAAK
Ga0228540_101141	Ga0228540_1011411	F102393	VTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNDAAEQLTKFTLLCSCASAWLYKSEPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKKDKDKNFTGAKDMELVRH
Ga0228540_101427	Ga0228540_1014271	F068493	LLHRGLSRGWGAWLEMLEERAAFLQLLSKGVRFMLNRKLAFGFVSWAQAIDRTLRQAEGSGHLCRAFLYFKNRHLARGWTAWHAEWADSVAARTIMRKSLGHLLNRGLSRGFSAWLEMAIERAVFLQKLRKGLSRMVNRKLAFGFDRWITAFAPRDDPMSKALLYLLNRGLSRGWVAWYTTWEVLRAKRESMRKSLSHMLNRGLSRGFGAWLEMAVERKAFLQQLRKGLSRMVNRKLALGFASWSEQTQGSAAMSKGLRHMMNRGLSKGWRAWQSMVEELKAKRESMRRSLSHMLNRGLSRGLGAWSEFAVERKAFLQHLHRGLSRMVNRKLANGFASWVEQVEGSESMSKGLRHMMNRGLSKGWRAW
Ga0228540_101681	Ga0228540_1016811	F007463	HDFVIEAGLITDMYSIDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLEKLSQFYELVSAGRPFLELDQWLKTLEGKLLFSDIMVDGYVVRLTEPQARAAFYASAATPSSGLLPDELPVCVARTACDKYKGVTPMGPGAKVTGFLANLLGDDDEEDVVLAATGGKALKD
Ga0228540_102275	Ga0228540_1022751	F063286	NASNTAEAFEQRQREKRNSQVQSELEDAAFTKNVNKPISPKKGAFPDVFLDKSGEMDLATMNKGKNAKPDNRLQLTEFLGCLVRISFLRANPKHGQYDNKAKLVELPGCLKKMLEEVLIPNAKQDMSSLFREEIAQDAEVQRVFDEYREKLTYYYNEVNQLTALKGKADNKLSMETWMDICRGYLHFAKRKGLKHMEKSKTSGKAGEGGGLGEGAFVGDCTVSRESDITGDERCKEKFTCRLSTLEAKFAFLNSQSLEQMTAGDSSDTDLMATLDFDEFIECLARCARDKYGEIKLM
Ga0228540_102328	Ga0228540_1023281	F061477	KPIKHLPGCLRAMIEDEILPRARKDTSAVFRETVMTELSVLKVLDEYRPKLKTWYNEATSDDSKQTDITDKLSMEQWMRVCDEKDLVGIWQCYRESDITGDPACKTEYKWRLSMPQVKMAFMDSQPSDQIGAAQSSGTDALAVLDFEEFLECCARLGIDKYRAVREVSPALAVQGFLQNLLGEKTPDEVVIEATYIHAKRYDAKETKPLKGESQADLDKWLDCWSRMEIMDVHLWPIWEKEVHDIMHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQY
Ga0228540_103141	Ga0228540_1031411	F028443	LVRTAFWRANPQWGSKYNKKDLTPVPESTQILLEECILPKAKRDTSGEFKKVLAGDQATQAVLAEYREKLQNWLRPILRKERRIDNPNPQMTYKMWVALMDGPDPETRERGGSKPPCPKMVGEWFLAQESQITGDERTSRKNQITFKAKLSIPQCRWNFLRSQTIEQVQGGDVDAEQSDVATLDFTELGECIARCAVNMYEHLMTTFLPSHNRKAMTMADATRAWLQNLLFEKTPEMCMWETTVIKADRYDWQK
Ga0228540_103145	Ga0228540_1031451	F012945	TMSGNSLMFTDSVICFKELIDKEETAKRQWRGKYGMNKEGWRPVEPFERTGASNCKAELPSGMPSAALRNPYLYRDTVGEDGLAGGAPTRFGGRWDVLNKDKPIDYSLQTGQRVVKKGPHDCYCEIGYNCWSMAGKARTANFGMMGVFEREFYTNTPGELALVWDFKSEEEKVAHAAKIAAMQKQARGEN
Ga0228540_103847	Ga0228540_1038471	F074505	MPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELSDVLGSINNDQLVAEPDVWLQPHQQRTTRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCMLACVVQGISCA
Ga0228540_104337	Ga0228540_1043371	F028443	CILPNARRDTSGEFKKVLQADAATQGVLTEYRDRLQAWLRPILRKERSTLNPNPKITYKRWVELMDGPDADTQGARGAKPPCPKMVGEWYLSQESQITGDERTAKKNQMTFKAKLSIPQCRWNFLRSQSVEQVEGGEVDADSSDIATLDFSELLECICRCAVNMYEHMLTTYLPSHNRKAMTMADAVRSWIQNLFFEKSPEMCMWEATVIKADR
Ga0228540_104441	Ga0228540_1044411	F087102	AAGLAKLRPYLDANMSKESADAFQECCGKLFVLSRVHTSMAPEVSFAKVQEITDALSRACSMASHAAAPLVAGLVTGLKRFVEQRILPNGALDHITKQGFRLPANEVGALLDRYRWPHDAKRTQVLHILRKTLEAVAELRTSSDAAVRGSESIEEARLILNHSHERLVRTMESVLDEHATRADPTLVLGQSLFVAVSRVAQAQEQENVHRL
Ga0228540_104565	Ga0228540_1045651	F087102	AAGLAKLRPYLDANMSKESAAAFQECCGKLFVLSRVHASMAPEVSFAKVQEITDALSRECSMASHTAAPLVAGLKRFVEQRILPNGALDRITEQGFRLPADEVGALLDRYRWPHDAKRTQVMCILRKILEAVAEIRTTSDAAVRGSESIQEARLILNHSHERLIRTVESVLDEHAKRADPTLVLGQNLFVAVSRVAQAQEQENVHRL
Ga0228540_104755	Ga0228540_1047551	F044875	STQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIP
Ga0228540_105375	Ga0228540_1053751	F074330	RNSLESTSQFLESAMLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLLQAFPYIV
Ga0228540_105645	Ga0228540_1056451	F088418	MRCRSVRLLLVAMLATQHTDFESFANALGGLPNQPPVPMECEPSPSPIDVDTKAIVQQVVNVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKVPALNKRDKRALAVLELMPVTRDCPQATIALLMSHASTHRSAADIKVLRRCGA
Ga0228540_106100	Ga0228540_1061001	F039966	VAIMSDGTERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPPEDGVYPVPTIAAAELAVLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQRALASRLNGKRADELTELLGATDGFGSAEERVAALAEPAFSPEGQLSEAMVGYAGGAPALQPQLTLWMAVTDDAKEV
Ga0228540_106549	Ga0228540_1065491	F095000	AADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228540_106916	Ga0228540_1069161	F091182	PDEAGRLHWNVLRNRMTGGRLVRVQQAKHTTVSYYKQASRAGEGFGNRSSSRFNSGTVDRVGPGKYSPALATHGALATSSGHSGKLKSTAPRFLKKPQSDAPGPGKYTPRHTLQDGRNEITPA
Ga0228540_107006	Ga0228540_1070061	F055416	AAARLATTMLRGRHTPHRPPARRLCALQESAAIRCNYPETYAYLKAKRDRHPIEDALEDYTQWTVMGEPLHPKITPIPKPGQPKPVEASSAIKKEETEEEYIRRRCEEFMHKSLSSRRGPGGKMFTIGGGGDAGVAYQVI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031642: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_4mM_1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences