Basic Information | |
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IMG/M Taxon OID | 3300032040 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133511 | Gp0321474 | Ga0307487 |
Sample Name | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - CBIW 1.2 |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 277280500 |
Sequencing Scaffolds | 8 |
Novel Protein Genes | 11 |
Associated Families | 3 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 7 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Extreme Environments Viral Communities From Various Locations |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Cryopeg Brine → Extreme Environments Viral Communities From Various Locations |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → area of sea ice → brine |
Earth Microbiome Project Ontology (EMPO) | Unclassified |
Location Information | ||||||||
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Location | USA: Alaska | |||||||
Coordinates | Lat. (o) | 71.2944 | Long. (o) | -156.7154 | Alt. (m) | N/A | Depth (m) | 7 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F027599 | Metagenome / Metatranscriptome | 194 | Y |
F034190 | Metagenome / Metatranscriptome | 175 | Y |
F037502 | Metagenome | 168 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0307487_1020021 | Not Available | 2318 | Open in IMG/M |
Ga0307487_1045986 | Not Available | 1105 | Open in IMG/M |
Ga0307487_1048469 | Not Available | 1054 | Open in IMG/M |
Ga0307487_1054649 | Not Available | 946 | Open in IMG/M |
Ga0307487_1054669 | Not Available | 945 | Open in IMG/M |
Ga0307487_1056802 | Not Available | 912 | Open in IMG/M |
Ga0307487_1065553 | Not Available | 800 | Open in IMG/M |
Ga0307487_1105700 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium | 511 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0307487_1020021 | Ga0307487_10200212 | F027599 | VVADIFGVIKLIPDPKLVPPVKAEYQFIFPEEAVAPKTTVPVPHLAAGVVPVIIGIALTVAITAVLAGVVHPLAVASA |
Ga0307487_1020021 | Ga0307487_10200213 | F027599 | MLEVVKVVPVPKLVPPVKAPYQFIFPEEAVAPKTTVPVPHLAAGVVPVMVGRGLTVAITAVLAAEVHSL |
Ga0307487_1020021 | Ga0307487_10200214 | F027599 | MLGVVKLVPVPKLVPPVKAPYQFIFPEEAVAPIPTVPVPHLAAGVVPEIVGIALTVAINAVLAAVVHPLSVAST |
Ga0307487_1045986 | Ga0307487_10459861 | F034190 | GSDSWLELQDCRAEGLTPFTGDSAAFPHIWAVLQHLIDTRSAFLNGDWCFINAVLGLMSPSATHPCPICIVSHKNYLHAARYRTPHDRHSLDRTHSPLLIIPPERIVPTPLHLFLGISNRIILDAFSELLGEAVVLEAVQRTKTVHSAGCTGASDLRDLNGPEISKFIKKECSMSALAAAGALSPVADSTKASHSVLSRWLQQLHHSLLRSGDWTADDIDTWRSVVDDIQQHWQSEAHSAPFPKLHMLRHSIDFAERHRFLGRASEAQIESYHASFNALFHKQHRNMSSNTAERLRRSLADAALHAVQPFVQQ |
Ga0307487_1048469 | Ga0307487_10484691 | F034190 | ITTVHSAGCGGKSDLYDLNGPEISKWIKKECSASVLTAAAVASSAAASTLPDSTRASHSILSRWLEQLHGALLHCRDWTAAEIDAWRSVVTDIQQHWSAEAHSKPFPKLHMLRHSLEFAERHRFLGRASEAQIESFHASFNTLFHDHHLNQGSNTSERLRRCLADASLRAMQPCLSSPSSAPSTPF |
Ga0307487_1054649 | Ga0307487_10546494 | F037502 | AHKMKMIGFTGIGVYSDTHYLDGPHPMFHGDVRPNENMGSPATWGRVEGKYTSLMAAIQSVKLGVNNGT |
Ga0307487_1054669 | Ga0307487_10546691 | F034190 | LGVTYSAAGKQHFACLLVYEGSDSWLELQDCRAEGLTPFVGESAAFPHIWAVLQHLIDTRSAFLNGDWCFINAVLGLMSPSATHPCPICIVGKSSLLSSPRYRTPADKHSLDRTHSPLLTIHPERIVPTPLHLFLGISNRIILDALSELLGKERVEAALKAVTTVHSAGCGGKSDLHDLNGAEISKWIKKECSASVLAAAAASSPLPASTTATHSILSRWLTQLHHSLLHAEDWAASDIDAWSSVVNDIQQHWQAEVHSAPFPKLHMLRHTVDFAERHRFLGRASEAQIESFHASFNALFHRQHRNQSSNTAER |
Ga0307487_1056802 | Ga0307487_10568021 | F034190 | SRYRTAADRHSLDRTHSPLLSIHPERIVPTPLHLFLGISNRIILDAFSELLGKERVQTALTAITTVHSAGCGGKSDLYDLNGPEISKWIKRECSATLLSAAAASSALPAATTASHSILSRWLQQLHHCLLRSGDWTAADIDAWRSVVSDIHSNWRAETSIAAFPKLHMLHHSVDFAERHRFLGRASEAQIESFHASFNALFHKQHRNQSGNTAERLRRSLADAALRAVQPFLSDPSSAPSTSF |
Ga0307487_1065553 | Ga0307487_10655531 | F034190 | RHSLDRTHSPLLIIHPERIVPTPLHLFLGISNRIILDALSELLGKERVETALKAVTTVHSVGCSGKSDLYDLNGQEISKWIKRKCSASVLAAAAATSALPAATRATHSILTRWLQQLHHSLLRAGDWTSADIDAWRTAVSDIHQHWSAEAHSRPFPKLHMLHHSVDFAERHRFLGRASEAQIESFHASFNALFHRQHRNQSSNTAERLRRSLADAALRAVQPFASS |
Ga0307487_1105700 | Ga0307487_11057001 | F027599 | VFDEILGVVKVVPVPKLAPPVAAAYQLIVPAEAVAPRITVPVPHRDPGVVPVMVGMALTVASTADLEPVVQPFDVAST |
Ga0307487_1105700 | Ga0307487_11057002 | F027599 | MFDEILGVVKVVPVPKLAPPVAEAYQLIVPVEAVAPRTTVPVPHRDPGVVPVLVGMALTVANIADLGLVVQPFDVAST |
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