Sample 3300033166

Overview

Basic Information
IMG/M Taxon OID	3300033166 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0136119 \| Gp0356216 \| Ga0334900
Sample Name	Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_31_08-R3
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	369318735
Sequencing Scaffolds	13
Novel Protein Genes	13
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin139	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1
Not Available	8
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
Type	Engineered
Taxonomy	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	Netherlands: Wageningen, Gelderland
Coordinates	Lat. (^o)	51.9691	Long. (^o)	5.6654	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F031354	Metagenome / Metatranscriptome	182	Y
F055749	Metagenome / Metatranscriptome	138	N
F066219	Metagenome / Metatranscriptome	127	Y
F070092	Metagenome	123	N
F075034	Metagenome / Metatranscriptome	119	Y
F079824	Metagenome / Metatranscriptome	115	N
F082560	Metagenome	113	N
F083694	Metagenome	112	Y
F089495	Metagenome / Metatranscriptome	109	N
F095525	Metagenome / Metatranscriptome	105	Y

Family

Category

Number of Sequences

3D Structure?

F022008

Metagenome / Metatranscriptome

216

F031354

Metagenome / Metatranscriptome

182

F055749

Metagenome / Metatranscriptome

138

F066219

Metagenome / Metatranscriptome

127

F070092

Metagenome

123

F075034

Metagenome / Metatranscriptome

119

F079824

Metagenome / Metatranscriptome

115

F082560

Metagenome

113

F083694

Metagenome

112

F089495

Metagenome / Metatranscriptome

109

F095525

Metagenome / Metatranscriptome

105

Scaffold	Taxonomy	Length	IMG/M Link
Ga0334900_1005725	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin139	7806	Open in IMG/M
Ga0334900_1009330	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	5165	Open in IMG/M
Ga0334900_1019825	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	2777	Open in IMG/M
Ga0334900_1027165	Not Available	2101	Open in IMG/M
Ga0334900_1030864	Not Available	1879	Open in IMG/M
Ga0334900_1040150	Not Available	1482	Open in IMG/M
Ga0334900_1043893	Not Available	1368	Open in IMG/M
Ga0334900_1057108	Not Available	1074	Open in IMG/M
Ga0334900_1066223	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga	934	Open in IMG/M
Ga0334900_1075832	Not Available	824	Open in IMG/M
Ga0334900_1090516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium	700	Open in IMG/M
Ga0334900_1094439	Not Available	672	Open in IMG/M
Ga0334900_1115440	Not Available	556	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0334900_1005725

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin139

7806

Open in IMG/M

Ga0334900_1009330

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009

5165

Open in IMG/M

Ga0334900_1019825

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium

2777

Open in IMG/M

Ga0334900_1027165

Not Available

2101

Open in IMG/M

Ga0334900_1030864

Not Available

1879

Open in IMG/M

Ga0334900_1040150

Not Available

1482

Open in IMG/M

Ga0334900_1043893

Not Available

1368

Open in IMG/M

Ga0334900_1057108

Not Available

1074

Open in IMG/M

Ga0334900_1066223

All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga

934

Open in IMG/M

Ga0334900_1075832

Not Available

824

Open in IMG/M

Ga0334900_1090516

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium

700

Open in IMG/M

Ga0334900_1094439

Not Available

672

Open in IMG/M

Ga0334900_1115440

Not Available

556

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0334900_1005725	Ga0334900_10057251	F095525	MKELTDIGLVAFGLVVGVVLGQLLHYHQINLLETIK
Ga0334900_1009330	Ga0334900_100933010	F055749	MAKRAENPMNLIMIIAVGILTLVAIITVGPVVGGSIELAMPAVAADSPWNATTNDDLPDGAVTWAQLIPLVVLAVLALIIGLVIMYFRNAAR
Ga0334900_1019825	Ga0334900_10198253	F083694	MMEEIERLKNRQLAKLLTHLERTGQLTVELKQTLKRAYRFAFEDVEALMQELGKENKDGNPKD
Ga0334900_1027165	Ga0334900_10271657	F022008	DLSKQVQALSEDNRASFGRIYDRLTKIETQMSERECQFRKFEKSLDNHEARIRSVEGELGTLRDVPERLWRVSMSNSKLTGMVAAAGGMGGLVATLIVKVLGD
Ga0334900_1030864	Ga0334900_10308643	F066219	MKKLLVIVLLIALSSLSFANIIEFFESIPPIVKFGIGAGIGIYGLAWAYPWFFDPIVIVGETDFGAFCFGPFIVINPYLWSEAPESSRNIVLNHEYVHYIQHALFGPILSLSYPIFSAYSILKTGNQWDANPWELQAIRISDTSKPDWEPSFVVELD
Ga0334900_1040150	Ga0334900_10401506	F022008	QVQALSDDNRASFGRIYDRLTKIETQMTERECQFKKFEKILDNHETRIRTVEGELGTLRDVPERLWRVSMSNAKLTGMVAAAGGVGGLVATIIVKMLGE
Ga0334900_1043893	Ga0334900_10438931	F089495	MGRPYLRKSHVDVRFYDGTATTPYTLDITGYSDIPELPEPVIDVAAEPYVVGGNFNSIEEGDDAVTLPEFAITIDINDADVVTGKYAIDQWFANHKEGTGTTALVSTNDGSAYLKKSIDGTTTSANLSTDYFTIGLKVLFDNGGTGKAFGKDFKYIRPID
Ga0334900_1057108	Ga0334900_10571082	F031354	TEGKGIWLMKTTFDISDILYPIINVTSVTGTIDGRVYRDKKPLNSELQDIVIIPLTNYNGDEIIQFPVYMVNCFCKNFDNGLPNITKLKTITDAVIKVIEDYSATSNYYVFEITNQTLMQDTDQISMSYVNLRINCYIEK
Ga0334900_1066223	Ga0334900_10662231	F070092	MAINDRLKPVMELLETNRQKIGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELADLEGEIRKIEYSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQTTGAIPGIPWERPDHVDVLVAELRNRGLDEEADLTWDYAYNKLKV
Ga0334900_1075832	Ga0334900_10758323	F082560	VTEKSIVKKIQEWFKSKGGVCYKVHGGPMSAGFPDLIGCIDADTWVVEAKVPNAKPRVPKSVRVGYPEEMQEWMEQGATVLQAKTLYDWQRAGAVALVATSVEDMERRFEKEYLSFKIGGEYYGRIGNA
Ga0334900_1090516	Ga0334900_10905161	F079824	MIYGFFGSIPGSPHNRGNHALRGNGKTMCLTFTGYLDYLNGRRVISNYKTVFSEYIPIQEIADMVMSENIKDTTILLSEIQVYINSLGADSEVLKTFIGSVIGQSRKRNVDVHYDTQRYGDIHPRLRVQTDRAYLPRKFHFDGSACSVDRCEKMHIIYLYMHDPYQYEPITHIRADVVGQLYDSNEIVAVPPKRIRKRKKKEDE
Ga0334900_1094439	Ga0334900_10944391	F070092	MAINDRLKPVMELLETNRQKLGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIRKIEDSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHKFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADITWDYAYNKLKVDRPWENNPLYKELKSQHNKVSV
Ga0334900_1115440	Ga0334900_11154403	F075034	GLCLIVYRTVRGNKPACEHLPSEAGLPGRVDRVAACRSCGAPTASSDGICRDCADAMREERAAALGEGCRVHRVRYVEDLPVSVLEEMQAEWGRC

Scaffold ID

Protein ID

Family

Sequence

Ga0334900_1005725

Ga0334900_10057251

F095525

MKELTDIGLVAFGLVVGVVLGQLLHYHQINLLETIK

Ga0334900_1009330

Ga0334900_100933010

F055749

MAKRAENPMNLIMIIAVGILTLVAIITVGPVVGGSIELAMPAVAADSPWNATTNDDLPDGAVTWAQLIPLVVLAVLALIIGLVIMYFRNAAR

Ga0334900_1019825

Ga0334900_10198253

F083694

MMEEIERLKNRQLAKLLTHLERTGQLTVELKQTLKRAYRFAFEDVEALMQELGKENKDGNPKD

Ga0334900_1027165

Ga0334900_10271657

F022008

DLSKQVQALSEDNRASFGRIYDRLTKIETQMSERECQFRKFEKSLDNHEARIRSVEGELGTLRDVPERLWRVSMSNSKLTGMVAAAGGMGGLVATLIVKVLGD

Ga0334900_1030864

Ga0334900_10308643

F066219

MKKLLVIVLLIALSSLSFANIIEFFESIPPIVKFGIGAGIGIYGLAWAYPWFFDPIVIVGETDFGAFCFGPFIVINPYLWSEAPESSRNIVLNHEYVHYIQHALFGPILSLSYPIFSAYSILKTGNQWDANPWELQAIRISDTSKPDWEPSFVVELD

Ga0334900_1040150

Ga0334900_10401506

F022008

QVQALSDDNRASFGRIYDRLTKIETQMTERECQFKKFEKILDNHETRIRTVEGELGTLRDVPERLWRVSMSNAKLTGMVAAAGGVGGLVATIIVKMLGE

Ga0334900_1043893

Ga0334900_10438931

F089495

MGRPYLRKSHVDVRFYDGTATTPYTLDITGYSDIPELPEPVIDVAAEPYVVGGNFNSIEEGDDAVTLPEFAITIDINDADVVTGKYAIDQWFANHKEGTGTTALVSTNDGSAYLKKSIDGTTTSANLSTDYFTIGLKVLFDNGGTGKAFGKDFKYIRPID

Ga0334900_1057108

Ga0334900_10571082

F031354

TEGKGIWLMKTTFDISDILYPIINVTSVTGTIDGRVYRDKKPLNSELQDIVIIPLTNYNGDEIIQFPVYMVNCFCKNFDNGLPNITKLKTITDAVIKVIEDYSATSNYYVFEITNQTLMQDTDQISMSYVNLRINCYIEK

Ga0334900_1066223

Ga0334900_10662231

F070092

MAINDRLKPVMELLETNRQKIGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELADLEGEIRKIEYSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQTTGAIPGIPWERPDHVDVLVAELRNRGLDEEADLTWDYAYNKLKV

Ga0334900_1075832

Ga0334900_10758323

F082560

VTEKSIVKKIQEWFKSKGGVCYKVHGGPMSAGFPDLIGCIDADTWVVEAKVPNAKPRVPKSVRVGYPEEMQEWMEQGATVLQAKTLYDWQRAGAVALVATSVEDMERRFEKEYLSFKIGGEYYGRIGNA

Ga0334900_1090516

Ga0334900_10905161

F079824

MIYGFFGSIPGSPHNRGNHALRGNGKTMCLTFTGYLDYLNGRRVISNYKTVFSEYIPIQEIADMVMSENIKDTTILLSEIQVYINSLGADSEVLKTFIGSVIGQSRKRNVDVHYDTQRYGDIHPRLRVQTDRAYLPRKFHFDGSACSVDRCEKMHIIYLYMHDPYQYEPITHIRADVVGQLYDSNEIVAVPPKRIRKRKKKEDE

Ga0334900_1094439

Ga0334900_10944391

F070092

MAINDRLKPVMELLETNRQKLGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIRKIEDSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHKFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADITWDYAYNKLKVDRPWENNPLYKELKSQHNKVSV

Ga0334900_1115440

Ga0334900_11154403

F075034

GLCLIVYRTVRGNKPACEHLPSEAGLPGRVDRVAACRSCGAPTASSDGICRDCADAMREERAAALGEGCRVHRVRYVEDLPVSVLEEMQAEWGRC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300033166: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_31_08-R3

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences