Sample 3300033741

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300033741

3300033741: Cryopeg brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 CB1

Overview

Basic Information
IMG/M Taxon OID	3300033741 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133511 \| Gp0330637 \| Ga0314856
Sample Name	Cryopeg brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 CB1
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	10091520
Sequencing Scaffolds	1
Novel Protein Genes	2
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Extreme Environments Viral Communities From Various Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Coastal → Unclassified → Cryopeg Brine → Extreme Environments Viral Communities From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → area of sea ice → brine
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	USA: Alaska
Coordinates	Lat. (^o)	71.2943	Long. (^o)	-156.7153	Alt. (m)	N/A	Depth (m)	7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000695	Metagenome	931	Y
F092845	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0314856_3080	Not Available	575	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0314856_1593	Ga0314856_1593_176_952	F092845	MDDLVTQFTDWWKINKDIIEQNIPKWIDGFTSALKVLTLAMGAFIAVRVITHLMQMISLMRGVTLAALAMNVGIFLLPALIASVATAIALLAEDAKVFFEGGDSFIGDMIEKYPQWESQIRTIAGIFNGIAEVTTMIFEGWSKIFGLFDEGGGDAMNQALKDKGLGFLTKEIGVTGEQGGVINDFLSDIGAGFLTREIGLFESGTLDTPLTSQTKTSTIIEKLEILVNGGNDSARNIGDEIYRVFQQTSQDLNSTVDQ
Ga0314856_3080	Ga0314856_3080_3_125	F000695	MNTEYFSTEEFREWSDEMSPRLVTMLDVLRYQLGRAIIISP

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