NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300034388

3300034388: Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B3A4.2



Overview

Basic Information
IMG/M Taxon OID3300034388 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0142001 | Gp0401921 | Ga0373907
Sample NameUranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B3A4.2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size414487500
Sequencing Scaffolds21
Novel Protein Genes23
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CSP1-81
Not Available12
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameUranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States
TypeEngineered
TaxonomyEngineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Oak Ridge, Tennessee
CoordinatesLat. (o)36.0103Long. (o)-84.2696Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001837Metagenome / Metatranscriptome628Y
F006410Metagenome374Y
F008255Metagenome / Metatranscriptome336Y
F016990Metagenome243Y
F023141Metagenome211Y
F026017Metagenome / Metatranscriptome199Y
F026599Metagenome / Metatranscriptome197Y
F027886Metagenome / Metatranscriptome193Y
F038523Metagenome165Y
F046458Metagenome / Metatranscriptome151Y
F050736Metagenome / Metatranscriptome145Y
F054982Metagenome / Metatranscriptome139Y
F057473Metagenome136Y
F063679Metagenome / Metatranscriptome129Y
F063811Metagenome129Y
F067888Metagenome125Y
F068994Metagenome124Y
F069483Metagenome / Metatranscriptome124Y
F073739Metagenome / Metatranscriptome120Y
F082485Metagenome113N
F088270Metagenome109N
F089121Metagenome109Y
F103508Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0373907_018100All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1519Open in IMG/M
Ga0373907_042461All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1036Open in IMG/M
Ga0373907_049112All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium968Open in IMG/M
Ga0373907_053140All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CSP1-8933Open in IMG/M
Ga0373907_069498Not Available822Open in IMG/M
Ga0373907_074945Not Available793Open in IMG/M
Ga0373907_090082Not Available725Open in IMG/M
Ga0373907_090267Not Available724Open in IMG/M
Ga0373907_100435Not Available688Open in IMG/M
Ga0373907_109074Not Available661Open in IMG/M
Ga0373907_112929Not Available650Open in IMG/M
Ga0373907_123136Not Available623Open in IMG/M
Ga0373907_126075Not Available616Open in IMG/M
Ga0373907_133636All Organisms → cellular organisms → Bacteria598Open in IMG/M
Ga0373907_140074Not Available585Open in IMG/M
Ga0373907_141231Not Available583Open in IMG/M
Ga0373907_143143All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria579Open in IMG/M
Ga0373907_146029All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium573Open in IMG/M
Ga0373907_151740All Organisms → cellular organisms → Bacteria562Open in IMG/M
Ga0373907_157681All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium552Open in IMG/M
Ga0373907_157741Not Available552Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0373907_018100Ga0373907_018100_1_369F050736MAAPTLSTVVLTGALIIVIFTVQFFYFRVVDNVWAEMVKRELKEIADYVADTIANLYFLANSTSTSSLLEKTLRLPVEIEASFFTLEIIRGQNNYAQSVKAVSMKGSWLNANAWLPPGLLVNV
Ga0373907_029200Ga0373907_029200_165_854F073739MKGLSCAAAASVVFIACATAYAQSPSSNKAFFAKSTDELVLAPVSGSTSGEVTLFDIPQALKTSSVGAVSATLSMEATLWTYNLTTAIVNGGKNSTSSRAAIKAWVEIDGTPMEPGLVVYADRLQATGLTVNLACQVPLTTCTVTGDITLELFQATKNANSFVFFKGPLDPIIHSVKVKAQGFIECRDNGGTVVACPAGTLAGYENASTQAAIGKATLLLEEHNNWGIK
Ga0373907_042461Ga0373907_042461_627_1034F023141AAEAPKAERLKAHRAFLSKREQLWKRILEGRFPETYLSVGNKKFVGAPRRTAIRCDFLLASRITLGREYMKDRISHLAQRDLLFDVLRYREVFPGRTGGKFYCCPKCTEKLYECVRSKVFHYIDNDKWKAEIEAC
Ga0373907_049112Ga0373907_049112_2_172F054982MELKPLSPELNELRNVIISSNLTSCYLVLELLKSEKDEALNYDKFRSHWIDVYRSTH
Ga0373907_053140Ga0373907_053140_713_931F069483KKWRAPSERIRTASEIPIVVALTDKDAVPTYVKTTDKVLHLRRLGMTYASIAECLGINLWMAKRAARWAKTR
Ga0373907_063460Ga0373907_063460_590_856F067888FGGFENKFLDETDGPKFLSTYDIGFIAQSGKEINEPIFTHLFISKKEGKEQGVYHLSTNDLITVYGMVRSAYKNEPWIEVYVVKRGME
Ga0373907_069498Ga0373907_069498_13_549F016990MLWQGAGIMAAPVSPADQKEILRTLTLAQYWIKQGDYNRAIMYVDFEGMAEIVMAGYWDKMAQKEKNEITTFMKNLIKEKFPVITRRLKLLKFGAITGNGNQVLCEALAVLDHTTENKDQKIQIGLLKRGNEWKAVEVYILKEGFLAGLNEDTVKPILKRGGTIQEALDAVRLVFQGQ
Ga0373907_074945Ga0373907_074945_602_748F038523MVTLWNRFYIFSGKIKLPIVGQIIRDAIEYDSYSTGEEIIKMLEADFL
Ga0373907_090082Ga0373907_090082_274_723F089121MSILILGNAKVLSPQERQGGNDMKRYFLKYSPAFLLLFTILLWGDSIHPAVETTVEEIIANKDSYDGKEVSVFGAVSTPRFKSSRHGKPYMTFPLLGDSKGRMNVLFWGDMKLKTGKKIRVTGIYKKMMEMGKYTFRDVIEASEIETEMK
Ga0373907_090267Ga0373907_090267_433_570F088270MIPLTLALSLQGRGDYSWFLPLEGRLRRLAEERGGLGEGEMSILF
Ga0373907_100435Ga0373907_100435_1_618F063811FDVYNRSIEIYLLSKYFENILHITLGIVFVVGTAYLWFFVLDLSVPVFRYLESKCILYTEPRVDFEEMLKLWRILIISFRDQFQTWCIISFLISLASLTIPYLWFKGKRFTKIFLALFFSGTVFSYFVSFLIKKLIISELTWIFVAVWTFSALITSMVFHLINTIWLNKISICRRCQTENSIHSKYCSECGHKLILLPKESRAGA
Ga0373907_109074Ga0373907_109074_24_473F027886MMGNKRRLSIKWGIMLVIIGLVAIQTQVHGNSWNWKFFFSDAECDFFYDPDTVFRSAEDTVRVWWKEVFHTKEVLRSRGFTGSEYEKAVYQINVSEINCKKKTSCRKFFMICSEEGTTILCNMHKRQLEEWVPVWQVHPTGVLYRELCR
Ga0373907_112929Ga0373907_112929_1_525F046458VAVAGALLSALAGCGDDSPRPPMVVITPEPVRGVIARTSVSGFQTDVWISIELLLSQRGVLDITADWTFPETWMYVYFGRTNCDYEQLASRNCPFILSSETKDPKPRVLYTEEVDPGTYYLVLYNVPRNPRTGIGSDNTEAVSIQLGLTVKASGERSTDAIHLGRPIVVSPPRL
Ga0373907_123136Ga0373907_123136_32_328F006410VYAHNSDLEVLGMSEKPKVSPERQKEMQERARERNVIIKGLKDQGPATLDELSKTTGIEKEKLFKHMIAMRQFGKIAIAGERDNQLVYGLPEGEPTTK
Ga0373907_126075Ga0373907_126075_41_616F008255MLQRSSRRAKEFPMIAQMQEFVADQTAAFQGQVEKIAKESVETVRETAVGGAETLKSLKSPVRTIARSTIKVTTVSQTAVASLIDLQSDMLTSAISDAALRLERASRADNIVELVREQFEMLPATRARIVEDAQRAALIFKHAGRDLRGVATHLYERVIETAEENVPEVKVVKRKTKRAVRKTTARARKTVA
Ga0373907_133636Ga0373907_133636_235_597F082485ERWRQYKSFWDLARTTSCKFSLVLSQALFVLLAYTLLQAHLFLRRRQEMNRRTRPRILEMLGPTVKVVAVYYQQRFCFLLLPEFAEILLTLTAAAGQKLLKKMRLLKRDLYQSLENARPP
Ga0373907_140074Ga0373907_140074_86_373F063679MLCAGGSSKAKAMTVQRQAPHLNERMPLSTSLLPTLFLFSALLAFQVGLPGLLAAREGGPTLFEVLLASLCVVTLAWWRCHRRDSTSPRRIRRGI
Ga0373907_141231Ga0373907_141231_164_313F057473MNGESKRDIALGALALGVGVALGAVLGNDATRKSLVDKGKSWINEYRQS
Ga0373907_143143Ga0373907_143143_155_493F068994MPAKEEIDDRFDSFYMELVKIVKRYTREEDMVGKNNGEIGILLPETDQTGSQAIIQRLLNLIHTHPQFKSDDVLRPHIQTLSFQSFTYPDQFAIPESLKTVLEELDKESLYH
Ga0373907_146029Ga0373907_146029_1_120F103508MEGLEKASEKQDNNFWISCLAFWIFIGCSPFLVKVSVRF
Ga0373907_151740Ga0373907_151740_3_464F001837LIRHRFEAYLDKVFGFSDLVTALPEGREFPQHPWKKVFDAVFLGAAMQIPSLLQIEAECCEGALTKRIGPISDDTIGYALQRQAPEPVFALSCEIARRLKRNGVLRSDWSRGLVVAAVDGIEICSSFVRCCDACMEREIEHKVNGEMRTDIQYY
Ga0373907_157681Ga0373907_157681_6_197F026017MKTSLAIVLATIALTFGAMLSFTSGVSAHDYGNLSGKSWGAYHPVPITLPPGPTPGPYGRSTH
Ga0373907_157741Ga0373907_157741_76_315F026599MAKAYCYCPKCKKMLTQVLSSFECLSTWDKAEDYYVPGNECELVNRCPDCGTLTKEKERKIHRELKKKPGKEHARASTF
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