NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000002

7000000002: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 809635352



Overview

Basic Information
IMG/M Taxon OID7000000002 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052466 | Ga0029051
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 809635352
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size15878867
Sequencing Scaffolds4
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → Viruses → Predicted Viral2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F036281Metagenome170N
F051214Metagenome144N
F071329Metagenome122N
F081456Metagenome114N
F103434Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C513869All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes526Open in IMG/M
SRS022532_LANL_scaffold_10229All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes748Open in IMG/M
SRS022532_LANL_scaffold_1050All Organisms → Viruses → Predicted Viral3110Open in IMG/M
SRS022532_LANL_scaffold_1058All Organisms → Viruses → Predicted Viral4551Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C513869C513869__gene_30750F018385MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGL
SRS022532_LANL_scaffold_10229SRS022532_LANL_scaffold_10229__gene_22173F103434KEGRTGRRFERGETFVIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTGSK
SRS022532_LANL_scaffold_1050SRS022532_LANL_scaffold_1050__gene_2210F081456MFEEPPIYYILISLIFLIVFGAISFATWLVWLTPVSFMAKLVMTAIGFLLCAITVILYTISAD
SRS022532_LANL_scaffold_1058SRS022532_LANL_scaffold_1058__gene_2235F036281MFSLIRVSEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTDFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS022532_LANL_scaffold_1058SRS022532_LANL_scaffold_1058__gene_2236F027205VASRLIVSADDILKAVKESEAFERKALSEARKRDRDEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK
SRS022532_LANL_scaffold_1058SRS022532_LANL_scaffold_1058__gene_2240F051214MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKNEWI
SRS022532_LANL_scaffold_1058SRS022532_LANL_scaffold_1058__gene_2241F071329MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSIGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED
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