NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000004

7000000004: Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 764224817



Overview

Basic Information
IMG/M Taxon OID7000000004 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052468 | Ga0029052
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 2 of subject 764224817
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size24444730
Sequencing Scaffolds9
Novel Protein Genes11
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → Viruses → Predicted Viral4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1
All Organisms → Viruses1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F043991Metagenome155N
F051214Metagenome144N
F067847Metagenome125N
F071329Metagenome122N
F081456Metagenome114N
F103431Metagenome101N
F103436Metagenome101Y
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C1597965All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes604Open in IMG/M
C1610290All Organisms → Viruses → Predicted Viral1150Open in IMG/M
C1611908All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria1503Open in IMG/M
C1613380All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus4428Open in IMG/M
SRS054776_LANL_scaffold_14507All Organisms → Viruses576Open in IMG/M
SRS054776_LANL_scaffold_16241All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes7104Open in IMG/M
SRS054776_LANL_scaffold_20534All Organisms → Viruses → Predicted Viral3342Open in IMG/M
SRS054776_LANL_scaffold_20654All Organisms → Viruses → Predicted Viral2754Open in IMG/M
SRS054776_LANL_scaffold_8369All Organisms → Viruses → Predicted Viral2772Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C1597965C1597965__gene_47078F018385MAEYENQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTIYSPEGRVNKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK
C1610290C1610290__gene_54018F051214MPGKIVAHDTHLQIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPLYVYNNREYQIACEFLRQVMHDKIDLKDEWI
C1610290C1610290__gene_54019F043991MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA
C1611908C1611908__gene_55104F103431MIDLDALIVGMLFFIQLFLQGIAWCVAIAHFLHTERGNAAAAAFDGAFGENIADCHAEDDNDKDAESQKEGFHVCIPEG
C1613380C1613380__gene_56348F103436MITTSKGGWRYKSDDEIFDSLRDWVMKCDLKYSKDDALGKIARASALWGGADYVTAVHLLDENKPYFKKSDWPYYALGIEILRARKHEFFNE
SRS054776_LANL_scaffold_14507SRS054776_LANL_scaffold_14507__gene_9104F105377VRDFDSLPLLTPEEAFERAREMGWNRPLFDHGYRVRGLEAWKAIETLLRQYDVEDLVIASFGLKGIEEIFDACAMLHERSWRLWQTTAKVYVGGELRTVQAIRARYRDV
SRS054776_LANL_scaffold_16241SRS054776_LANL_scaffold_16241__gene_10893F067847MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELKNL
SRS054776_LANL_scaffold_16241SRS054776_LANL_scaffold_16241__gene_10897F081456MFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAMTVILYTISAE
SRS054776_LANL_scaffold_20534SRS054776_LANL_scaffold_20534__gene_16726F027205VASRLIVSADDILKAVKESEEFERKALKEAQKRDRAEGKDPRETLHPNPDLKPGREIVLDYIKNPERRRTPRCSVRLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPKRIRK
SRS054776_LANL_scaffold_20654SRS054776_LANL_scaffold_20654__gene_16986F051214MGYRLLKGTHMPGKIIAHHTHLRIDTEFIELRDCFEAFRRGVEYKEKNDVDDILVICNTTDLIEYQLKNGDSVIVTHDPIHRIMVMRLFLHDENIALKPVYIYNNREYQIACEFLRQILHDKIDLKKEWLV
SRS054776_LANL_scaffold_8369SRS054776_LANL_scaffold_8369__gene_3977F071329MLPVAKIILSGLTSIGAGMIASKLTKPLVSNSSGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEARSHVEIED
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