NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000007

7000000007: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159551223



Overview

Basic Information
IMG/M Taxon OID7000000007 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0052471 | Ga0029057
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 159551223
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size130602022
Sequencing Scaffolds23
Novel Protein Genes29
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium1
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4162
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F04321
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F027205Metagenome195N
F030786Metagenome184N
F036281Metagenome170N
F043991Metagenome155N
F045567Metagenome152N
F051214Metagenome144N
F053092Metagenome141N
F057446Metagenome136N
F061926Metagenome131N
F063778Metagenome129Y
F066860Metagenome126N
F067847Metagenome125N
F071329Metagenome122N
F077403Metagenome117N
F090517Metagenome108N
F092231Metagenome107Y
F092232Metagenome107N
F095631Metagenome105N
F095632Metagenome105N
F097526Metagenome104Y
F101359Metagenome102N
F105376Metagenome100N
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C3727825Not Available579Open in IMG/M
C3743270All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii633Open in IMG/M
C3748800All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium656Open in IMG/M
C3805219All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium1199Open in IMG/M
SRS017139_Baylor_scaffold_104067Not Available35309Open in IMG/M
SRS017139_Baylor_scaffold_107531All Organisms → cellular organisms → Bacteria1173Open in IMG/M
SRS017139_Baylor_scaffold_107543All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4166803Open in IMG/M
SRS017139_Baylor_scaffold_108039All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes13460Open in IMG/M
SRS017139_Baylor_scaffold_14601All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA41632779Open in IMG/M
SRS017139_Baylor_scaffold_19389Not Available2048Open in IMG/M
SRS017139_Baylor_scaffold_19413Not Available1283Open in IMG/M
SRS017139_Baylor_scaffold_24229All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F04321109Open in IMG/M
SRS017139_Baylor_scaffold_25366All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium594Open in IMG/M
SRS017139_Baylor_scaffold_26305All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1039Open in IMG/M
SRS017139_Baylor_scaffold_39017All Organisms → Viruses → Predicted Viral3866Open in IMG/M
SRS017139_Baylor_scaffold_39447All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1326Open in IMG/M
SRS017139_Baylor_scaffold_58149All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces4613Open in IMG/M
SRS017139_Baylor_scaffold_68237All Organisms → cellular organisms → Bacteria → Proteobacteria2610Open in IMG/M
SRS017139_Baylor_scaffold_72401All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium832Open in IMG/M
SRS017139_Baylor_scaffold_8304All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia1437Open in IMG/M
SRS017139_Baylor_scaffold_86848All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes44046Open in IMG/M
SRS017139_Baylor_scaffold_87447All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia547Open in IMG/M
SRS017139_Baylor_scaffold_97085Not Available579Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C3717673C3717673__gene_205468F022002EARAIIQRQGGKIILEDGIHAGSNDVDYTVTGLNYARRPTQTVCMFFYKGHLRRIVFIFNDLDVLEQIESELEDKYGTMAEGVGTSKMKSKVVFDAFTRLLVVRGFKHEGHFGFKDAYITYSDDELDRARSAEKESEI
C3727825C3727825__gene_208376F053092EERLPITAPRHDEAISLVKEWRPFTDQLMQSDQGLILCLTHALLVLGALILEPAEMEDPMDDHTVQLFGILVAKELGIATHRIEADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK
C3743270C3743270__gene_212837F090517FLASSCKNKKDTPRLELSSVELRQTVWNGTLEYKNAKRGSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQANAGNPDREATLTLRKKL
C3748800C3748800__gene_214469F030786MLVVMIVTSSLQLLLKNGSTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFENNNNRILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC
C3805219C3805219__gene_231451F066860MTTKKQKLQKQQTIDTWIVIALWVSAIWFSLARGFITGVGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTFGIAEDREETTEDVTI
SRS017139_Baylor_scaffold_104067SRS017139_Baylor_scaffold_104067__gene_137473F105376MNKNNEQPEVSAKEFGALQANVEHIKEGVDKHTITLERIENIARANVTQAQLAAHEKESEVKYVKRSEIEGVMNFWKLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQTQVRRK
SRS017139_Baylor_scaffold_107531SRS017139_Baylor_scaffold_107531__gene_145870F097526MTADNKTPITPYTQDGYSQLCERLEDDTVVATLRAHIDTFAADGNRALLKRFTEGLRIAGEMEKACRVGYPTPAEEERRERWDSNFKQLQQHARMAGDQITNADNAAVSRLTAQCERNGRSDTELSVAHDDAYGFAVALRDIPLNEKQTALLWRMAVLTIAEMTDTTPSLAADYLNGTAGEHLGRMLAEKTVYPVTV
SRS017139_Baylor_scaffold_107543SRS017139_Baylor_scaffold_107543__gene_145919F095631MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQLNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNHVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAAADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQSFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTEDNKLDISIIIA
SRS017139_Baylor_scaffold_108039SRS017139_Baylor_scaffold_108039__gene_148167F095632MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSLQTPQTN
SRS017139_Baylor_scaffold_14601SRS017139_Baylor_scaffold_14601__gene_15954F092232MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGSQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSTSAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVAAFIISINKYATKKFTLDNIYNTDFWICKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNDPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRNPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED
SRS017139_Baylor_scaffold_19389SRS017139_Baylor_scaffold_19389__gene_21456F077403VGHAEEGISVRFEVHWHREHNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDASRPEKYNLTYYVPRWATYPLKGAGHSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGCWQFLLPDWEASGRLRDERIPLNVYQLRGKDSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM
SRS017139_Baylor_scaffold_19413SRS017139_Baylor_scaffold_19413__gene_21491F022002MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVQAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFEYEGHVRIDHAYIAYTDKELDRARSAEKESEN
SRS017139_Baylor_scaffold_24229SRS017139_Baylor_scaffold_24229__gene_27141F097526MRSTSTLSSKTTAIAPYTQDGYRRLCERLDDDTVAALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSQLTQQCEKNGSRDTAIPLPRDDYGFAAAVRDFPLSETQTALLWRMALLTIAEIADIAPELAAIYLNGTGGEHMGRALVEKTVYPVTVVSNLARLLHEQHKSGQLQRDLRYITTALGSEVQXQKWLKPASC
SRS017139_Baylor_scaffold_25366SRS017139_Baylor_scaffold_25366__gene_28407F061926DYICVRYQLMMIKTAKHIKTFLASVLLLIFVMNVSGLFVQLHHQETHQKTEKIAECSDKVCYHKAHLQTKNDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
SRS017139_Baylor_scaffold_26305SRS017139_Baylor_scaffold_26305__gene_29542F045567MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTGIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEKPRLTEREGAW
SRS017139_Baylor_scaffold_39017SRS017139_Baylor_scaffold_39017__gene_45164F105377MSDFDKLPLLTPEEAFERAWEGGGSAHPVFDRGYRVQGLNAWKAIETLLCQNDVRDITVASFGLKRFEEILDAIAMLHERGWRLWQTSANVYVDGEKRPVQAIRAHYRGI
SRS017139_Baylor_scaffold_39447SRS017139_Baylor_scaffold_39447__gene_45736F057446MNSISFGKTTVTSYPEYFEIADNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFAKVSHFKTISAVLWLVIFVLQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
SRS017139_Baylor_scaffold_58149SRS017139_Baylor_scaffold_58149__gene_69869F063778MPETISEGAKQQLLQQLQDALGLVKDADTSTHDVAAITHSAADGHQLTEVMLQEMTAARDYLKSCADQIEYAISNIKAIPLDPPPDD
SRS017139_Baylor_scaffold_68237SRS017139_Baylor_scaffold_68237__gene_83660F097526MTTDCTTALTPYSHDGYCQFCERLDDDTVAALLHAHIRAFAADGNRALLRRLTDAMRVTSAMENACRDGYPTPAEQARRERWDNQFRELQQQARMAHCEIVNADNAAVSRLTAQCEANGSCNTAIPLPCDDYGFAAALRDLALNTTQTALLWRMAVLTIAEMADVTPELAARYLNGTAGEYLGRALSEKTLYLVTVVSNLAWLLHEQHKSGQLQCDLRHTAAALDDAELREKPQ
SRS017139_Baylor_scaffold_72401SRS017139_Baylor_scaffold_72401__gene_89240F101359KRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQNFTDSYKETVK
SRS017139_Baylor_scaffold_8304SRS017139_Baylor_scaffold_8304__gene_8716F092231MIIFSPQNFITWANALIQFPWPIQLNGFPAYAEQLGWKPTSRPTWFNVVPEKNDEITILSSSEAGDVYKLFLHMAANDADDVEGAAELNDHFVSCVAAGREAWGEPFLLEAGDDPTATWRFPGDMFAQVTGGFTAVLFRFFTPEGRWYFL
SRS017139_Baylor_scaffold_86848SRS017139_Baylor_scaffold_86848__gene_109294F036281MITLIKVDKGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWVMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYELRQYHVKSFMRVPGSTDLWITAEREHGRWYTFRMSDDQKSKFTRHTMTNEKGHQTYDWVLENVEWAADTIRYF
SRS017139_Baylor_scaffold_86848SRS017139_Baylor_scaffold_86848__gene_109295F027205VASRLIVSADDILKAVKKSEEFERKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHIEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIKRSTK
SRS017139_Baylor_scaffold_86848SRS017139_Baylor_scaffold_86848__gene_109297F043991MSKKNPSVIDYFSINGDVIEEANEFDGISLEDWIDKRSSIKPSWTGQYSRQMHFDLPDDTEVSFYLTLNVVYADIIFADGVRTILFKCRQKKNLTRFISRVLEMANLGPKHVHPDFRA
SRS017139_Baylor_scaffold_86848SRS017139_Baylor_scaffold_86848__gene_109298F051214MPGKIVPHETHLRIDTEFIELKDCFEAFRRGVEYKDKNDIDEILVISNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWI
SRS017139_Baylor_scaffold_86848SRS017139_Baylor_scaffold_86848__gene_109299F071329MLPVAKIIISGLTSIGAGMIASKFTKPLVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDATVKAVQEARDHVEIED
SRS017139_Baylor_scaffold_86848SRS017139_Baylor_scaffold_86848__gene_109307F067847MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVKEDPKYKELDDKLKETELNNL
SRS017139_Baylor_scaffold_87447SRS017139_Baylor_scaffold_87447__gene_110251F092231PPQDFITWTNTLTQFPWPIQVNDFAPYAEKLGWKPTSLPDEFGVCPDKDDEITILSSDRDGNVRNLFLYMASNEAEDDEGAAEMNDHFVSCVAVGRKAWGEPFLLEAGDGPGVTWRFPGDMFSQVAGGFTAVLFNFFTPEGRRQFL
SRS017139_Baylor_scaffold_97085SRS017139_Baylor_scaffold_97085__gene_125245F053092EERLPITAPKHDEAITLVKEWRPFTDQFMQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHAVQLFSVLIAKELGIATHRIKTDEHVPRDHIPLTLIEGDDIGIVVMIKEVLIGLQDALITTELVAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK

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