Sample 7000000010

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 7000000010

7000000010: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765135172

Overview

Basic Information
IMG/M Taxon OID	7000000010 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052474 \| Ga0031052
Sample Name	Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765135172
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	21014360
Sequencing Scaffolds	3
Novel Protein Genes	3
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
C1264902	All Organisms → Viruses	574	Open in IMG/M
SRS018778_WUGC_scaffold_12106	All Organisms → Viruses	871	Open in IMG/M
SRS018778_WUGC_scaffold_6945	All Organisms → Viruses	2588	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1264902	C1264902__gene_27233	F105377	VRNFDKLPLLTPEEAFDRAREEGGSAHPVFDRGYRVRGLDSWKTIETLLCQYDVQDITVASFGLKRFEEILDAIAMLHERGWHLWQTSANVYVDGEKRTVQAIRARYRVI
SRS018778_WUGC_scaffold_12106	SRS018778_WUGC_scaffold_12106__gene_11800	F105377	VRAEMRDFDKLPLLTPEEAFERAMEMGWNRLLFDHGYRVRGLNDWKGIETLLRQYDVDDAVIASFGLKRFEEIFDVFAMLSDRGWSLWQTSANVYVDGELRTVPAIRAHYCGD
SRS018778_WUGC_scaffold_6945	SRS018778_WUGC_scaffold_6945__gene_5617	F105377	VRDFDSLPLLTPEEAFERAREMGWDLPLFDHGYRVRGLEAWKAIETLLRQYDVEDLVIASFGLKGIEEIFDAFAMLHERGWRLWQTTAKVYVGGELRTVQAIRARYRDV

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