NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000014

7000000014: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160603188



Overview

Basic Information
IMG/M Taxon OID7000000014 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052478 | Ga0031046
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 160603188
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size40118741
Sequencing Scaffolds17
Novel Protein Genes19
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma linguale1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Kingella → Kingella oralis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030786Metagenome184N
F036281Metagenome170N
F040149Metagenome162N
F042387Metagenome158N
F043235Metagenome156N
F045567Metagenome152N
F047127Metagenome150N
F047508Metagenome149N
F051212Metagenome144N
F053092Metagenome141N
F055792Metagenome138N
F058221Metagenome135N
F059076Metagenome134N
F064818Metagenome128N
F071329Metagenome122N
F080165Metagenome115N
F094006Metagenome106Y
F097490Metagenome104N
F101359Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2706055Not Available527Open in IMG/M
C2708305All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium544Open in IMG/M
C2721599All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes684Open in IMG/M
C2733731All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1016Open in IMG/M
C2742862All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales3708Open in IMG/M
SRS017814_Baylor_scaffold_12808All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1555Open in IMG/M
SRS017814_Baylor_scaffold_15982All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes671Open in IMG/M
SRS017814_Baylor_scaffold_1972All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma linguale1720Open in IMG/M
SRS017814_Baylor_scaffold_21334All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas4192Open in IMG/M
SRS017814_Baylor_scaffold_23242All Organisms → cellular organisms → Bacteria2240Open in IMG/M
SRS017814_Baylor_scaffold_25013All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2529Open in IMG/M
SRS017814_Baylor_scaffold_27616All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae3839Open in IMG/M
SRS017814_Baylor_scaffold_27737All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales4332Open in IMG/M
SRS017814_Baylor_scaffold_28070All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1689Open in IMG/M
SRS017814_Baylor_scaffold_28316All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales745Open in IMG/M
SRS017814_Baylor_scaffold_28730All Organisms → cellular organisms → Bacteria5258Open in IMG/M
SRS017814_Baylor_scaffold_9251All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Kingella → Kingella oralis788Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2706055C2706055__gene_65864F097490FLKTQKMNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIGGEMIEGEIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYMEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYE
C2708305C2708305__gene_66849F080165NNKTKTISTLDLEKVVINYKELPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHAPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
C2721599C2721599__gene_72775F071329MLPVAKIILSGLTSIGAGMIASKLTKPLVSNSSGIAKILLWFGSVGTGLAASAIVAREVEKQFDETVAAVKEARDHIEIED
C2733731C2733731__gene_78679F042387MAGLFLISCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYNSSEVLVNENVKYHSESYAYNLKDENFTHTYVLNGENITKIHHEISKNVPSGHFYLNPNNMVVIDEEVTYDAKNSPYKKIKGFSALATEFCGLDKDENTIADYLNYRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTITTMVYEYNK
C2742862C2742862__gene_84185F045567MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVNEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS017814_Baylor_scaffold_12808SRS017814_Baylor_scaffold_12808__gene_13022F058221MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNASFLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI
SRS017814_Baylor_scaffold_15982SRS017814_Baylor_scaffold_15982__gene_16574F036281DIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRVKNGDLMSNGSVLFLAEERKIYNAKEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS017814_Baylor_scaffold_1972SRS017814_Baylor_scaffold_1972__gene_2021F030786MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGNAMGAKKISLTDIVDGDDSETGVLKVKYFDDGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
SRS017814_Baylor_scaffold_21334SRS017814_Baylor_scaffold_21334__gene_22955F053092MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHAVQLFSVLIAKELGIATHRIKTDEHVPRDHIPLTLIEGDDIGIVVMIKEVLIGLQDALITTELVAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS017814_Baylor_scaffold_23242SRS017814_Baylor_scaffold_23242__gene_25439F040149VADEGAEELRWEVLIKEQSIPVLFVEVEAWYDGRVSSSEILGSVGIALEREPRLAPVWSHDSKDAIDYFIYDTSVPKGHALTAVRERETVVAQLLNIHRMF
SRS017814_Baylor_scaffold_23242SRS017814_Baylor_scaffold_23242__gene_25440F055792MEIASQALDSTPAVAHRILLLTTQLGESLLASFGAEDGVITEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYPLETLQKEGYILFEGSMLTCEARRVDSRSSIKSLDLESRIIGKAMKPVALPHVARLDEGIPLQRIGGLGDLLVTPDVSQADDL
SRS017814_Baylor_scaffold_25013SRS017814_Baylor_scaffold_25013__gene_27963F047127MKKTFVFILLSIISLAKAQQTEIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDTDIREILEKYNSK
SRS017814_Baylor_scaffold_25013SRS017814_Baylor_scaffold_25013__gene_27965F051212MKKFFFIFVLYWLHSCNGTEKVNADTIKTSIFEKQNTEKIERIIYSQTGGDTGGKNVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSQLYNHLNLEK
SRS017814_Baylor_scaffold_27616SRS017814_Baylor_scaffold_27616__gene_32175F094006MRGTLESAGPTGALHEPAVSVEAHIGELQAGGIACRGLFAFGGSNLLAVAELGAEAPHAIDMYDIALCEPLSELFAEELEYAFNFGA
SRS017814_Baylor_scaffold_27737SRS017814_Baylor_scaffold_27737__gene_32398F047508MLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFKNVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS017814_Baylor_scaffold_28070SRS017814_Baylor_scaffold_28070__gene_33069F101359FLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK
SRS017814_Baylor_scaffold_28316SRS017814_Baylor_scaffold_28316__gene_33634F059076NTTIPTRTLTIKNSTADKGKPVLRLVDAPIYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYTFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTQNGSNWGIYADYPNIGSYEFTSGSTDIGQLVDGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLKKLE
SRS017814_Baylor_scaffold_28730SRS017814_Baylor_scaffold_28730__gene_34804F043235MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIYRIDTIPKEVWEFIEVTREIVDSLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS017814_Baylor_scaffold_9251SRS017814_Baylor_scaffold_9251__gene_9393F064818MGERKKHPIPNNINGNTPKLYFTNHKFIVVLLPYFTYMNKDEFLKELIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMDNTFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDDTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPPCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIF
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