NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 7000000027

7000000027: Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 764143897



Overview

Basic Information
IMG/M Taxon OID7000000027 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052491 | Ga0031339
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2 of subject 764143897
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size94084830
Sequencing Scaffolds17
Novel Protein Genes18
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria3
All Organisms → cellular organisms → Bacteria3
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F00401
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030786Metagenome184N
F032313Metagenome180N
F043990Metagenome155N
F046432Metagenome151Y
F051212Metagenome144N
F054110Metagenome140N
F066860Metagenome126N
F067846Metagenome125Y
F068942Metagenome124N
F071327Metagenome122N
F073671Metagenome120N
F076191Metagenome118N
F077404Metagenome117N
F078842Metagenome116N
F094007Metagenome106N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2486078All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium502Open in IMG/M
C2532960All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium839Open in IMG/M
C2541941All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales990Open in IMG/M
C2562593All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1890Open in IMG/M
C2568910All Organisms → Viruses → Predicted Viral2812Open in IMG/M
C2570002All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria3095Open in IMG/M
C2573846All Organisms → cellular organisms → Bacteria4869Open in IMG/M
SRS056622_LANL_scaffold_10960Not Available596Open in IMG/M
SRS056622_LANL_scaffold_11578All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes25262Open in IMG/M
SRS056622_LANL_scaffold_11988Not Available518Open in IMG/M
SRS056622_LANL_scaffold_14516All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae839Open in IMG/M
SRS056622_LANL_scaffold_24042All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria14491Open in IMG/M
SRS056622_LANL_scaffold_36499All Organisms → cellular organisms → Bacteria62728Open in IMG/M
SRS056622_LANL_scaffold_38617All Organisms → cellular organisms → Bacteria14208Open in IMG/M
SRS056622_LANL_scaffold_48183All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F00402748Open in IMG/M
SRS056622_LANL_scaffold_7937All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2338Open in IMG/M
SRS056622_LANL_scaffold_8591All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria8072Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2486078C2486078__gene_120770F030786VVFQMLVVMIVTGSLQLLLKNGSAAKGGSATGTKKISLADITGGDGSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
C2532960C2532960__gene_137635F071327MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKSNQILTLKVLIIALVAALLFEYAYPWRIIFG
C2541941C2541941__gene_141094F051212MKKFFFIFVLYWLHSCNGTEKVNADTIKTSISEKQNTEKIERVIYESGGDKSGKNVHLVIAKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKYSQLYNHLNLEK
C2562593C2562593__gene_149219F043990MIKKLGIIFTFGVIILGIVVYADHKIESSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDKLDSSFTKLNKLPIKEDLPPNGIPKQFLNITNGYYKYIGDENDDRNFGILIVDTTRKEICIYNQIF
C2568910C2568910__gene_152003F067846MSIIADWERKTFNDYDRRCCAEDAYNRAIEREIECIEDDISNGDSEELWKFSEKAFEDDEFVKAIALGNDFEEMRIKILTAMAEDRLEQLEKDYRNGYILND
C2568910C2568910__gene_152009F073671MKKEQAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKG
C2570002C2570002__gene_152508F046432MWEMTESELSEVISKYQMPEGRYLVEQEGSFGESEFFWVIKNQLTNQKYLLMNTYSHHGVEDEVEYYREEGFDNLEAIPRKIETLENASDADDEISKYLFGMYSIFEIKS
C2573846C2573846__gene_154520F046432MWEMTENELSGIISKYQMTEGRYSLEEEGSFGESEFFWVIKNQSTNKKYLLVNTYSHHGVESELECYREGGFDNLEAIPRKIETLENASDADDEISKYLFGMYSIFEIKS
SRS056622_LANL_scaffold_10960SRS056622_LANL_scaffold_10960__gene_14785F068942LFAGCGENYDGSVTEVHWSNVKNPEYGNAINITLKAEGETFTTVGDHSWISFSNDASTLDTFTRHRFPEVDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFKFSVSVTPPGLYIFKVRQPALPAKAQ
SRS056622_LANL_scaffold_11578SRS056622_LANL_scaffold_11578__gene_15668F054110VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVSRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD
SRS056622_LANL_scaffold_11988SRS056622_LANL_scaffold_11988__gene_16282F032313KPQFDEVGERIWYEQTPTMRLDSTDYGAGLTPVFGMRTSSISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWVTTTEFTCRNGVILLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK
SRS056622_LANL_scaffold_14516SRS056622_LANL_scaffold_14516__gene_19559F068942MIRKILSLPTLALCFTLGSAFFAGCNEDYIKNTETKVRWSNVKNPKYGDYINITLKAEGETFTTVGDHSRISFSGSVSTLDTFTRHDFSESDKDTAYYKDIVIYLTRNKSKGTATLKLVAPPNRTQQPKQFDFSIEVTPPSLYIFKVRQPALPAKAQ
SRS056622_LANL_scaffold_24042SRS056622_LANL_scaffold_24042__gene_33213F094007MELKTAEVLDLARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDKDFTKRNRIIVEMCDLFGRIRRRAGFAECHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA
SRS056622_LANL_scaffold_36499SRS056622_LANL_scaffold_36499__gene_51788F066860MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLAPWALIVSCICLAIISRQMKKRHVSKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDRE
SRS056622_LANL_scaffold_38617SRS056622_LANL_scaffold_38617__gene_55195F078842MIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSSEVKKTYDEALREFDKIVIPEDDILRAASECGIEMNRNIVEVDRSELSKKLREVQLSPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHMQTPVDQALAAIVIQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKSLSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCVIGGKGWLEMADSARIRQMVNSIELDIYEVNS
SRS056622_LANL_scaffold_48183SRS056622_LANL_scaffold_48183__gene_71207F077404MAQQIIMTHKLAAAALSLKEPTQIGNTQNPFAMNTLKTIFTCFFTLCFMMVANSYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTALLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTHNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFR
SRS056622_LANL_scaffold_7937SRS056622_LANL_scaffold_7937__gene_10445F068942LFAGCGENNEGFVTKVRWSNVKNPKYGDDINITLKAEGETFTTVGDHSQIFFGYDASTLDTFTRHRFPKVDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKHFKFSVSVTPPGTYFFNVRQPALPAKAQ
SRS056622_LANL_scaffold_8591SRS056622_LANL_scaffold_8591__gene_11325F076191MKIIAENPAEEALLWRIKALSDELVNQDNRSTNMPVWTILDNNKAGKDYGAVMYFTGKAAEQHINENAHHYEKPMTCVRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.