NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000046

7000000046: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159591683



Overview

Basic Information
IMG/M Taxon OID7000000046 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052511 | Ga0031007
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 159591683
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size134092842
Sequencing Scaffolds18
Novel Protein Genes19
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.1
unclassified Campylobacter → Campylobacter sp.1
All Organisms → Viruses → Predicted Viral1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F030786Metagenome184N
F046431Metagenome151Y
F051211Metagenome144N
F059076Metagenome134N
F061925Metagenome131N
F064819Metagenome128N
F070224Metagenome123N
F071327Metagenome122N
F074985Metagenome119N
F078842Metagenome116N
F084362Metagenome112N
F085821Metagenome111N
F095630Metagenome105N
F097526Metagenome104Y
F101358Metagenome102Y
F103430Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C3559707Not Available565Open in IMG/M
C3563439Not Available576Open in IMG/M
C3584752All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales655Open in IMG/M
C3618447All Organisms → cellular organisms → Bacteria861Open in IMG/M
C3620255All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium878Open in IMG/M
C3624863All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae919Open in IMG/M
C3635830All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1048Open in IMG/M
C3655748Not Available1466Open in IMG/M
C3678108All Organisms → cellular organisms → Bacteria3712Open in IMG/M
SRS013252_Baylor_scaffold_13730All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria4237Open in IMG/M
SRS013252_Baylor_scaffold_25858All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.4823Open in IMG/M
SRS013252_Baylor_scaffold_42115All Organisms → cellular organisms → Bacteria781Open in IMG/M
SRS013252_Baylor_scaffold_48066All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium627Open in IMG/M
SRS013252_Baylor_scaffold_50700unclassified Campylobacter → Campylobacter sp.4405Open in IMG/M
SRS013252_Baylor_scaffold_51062All Organisms → Viruses → Predicted Viral1514Open in IMG/M
SRS013252_Baylor_scaffold_63115All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales4569Open in IMG/M
SRS013252_Baylor_scaffold_63796All Organisms → cellular organisms → Bacteria7438Open in IMG/M
SRS013252_Baylor_scaffold_9696Not Available30972Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C3559707C3559707__gene_175547F022002EARAIIQRQGGKIIAEEGAQNGGDDGGYAFTGFKYARRPTSLITLHFYKGHLRKIAFVFDKLDVLEQIESELENKYGMMAEGKETSKMKSKVIFDAFTFLEVVRRFEYEGHVGFDHAYIAYTDAELDRARLAEKESEI
C3563439C3563439__gene_177000F022002YAQDGQSKEPIDRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI
C3584752C3584752__gene_185529F059076GQKVGINTTIPTRTLTIKNSTANNGKPLLRLVDAPIYSKNVGSDMDADLGGNTATSTNYTDYRPLVVDKVGDVYKGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPNSGKIVMLRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFN
C3618447C3618447__gene_199185F046431MKKISKLCITIILILSIIITYGSGIIARAAESDLTLTPRPETNNIHLKWTGPQNSSYKVYQKKPGSNHFETIGLTDFSNNATDEEVKVLNIYPISEYNNPAVSTGTTIPNVNVTYLDGYTETIPKSALLKVWMEGRNSN
C3620255C3620255__gene_199962F064819MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTEIMISEEDLDIERSDLEDLIRNLKDLCEYKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDEIYMNSINFSFQTDLNGIATFSKEISQEIEKCK
C3624863C3624863__gene_201849F061925MGWEYSINLDSEESVSSVVKDLKNCELFSSSTTDYIDWKKPKSIDSIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHNHYLTDCDTDEEVTLEHIFRSVI
C3635830C3635830__gene_206565F046431EYINVNIRYSIFKFKKEISMLKKVTQKGVKIISIIIMVLSMMISYSSIMISNAAESDLTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGASSFETIGLTDFSNVDEEVKVLNVYPVPTAVYNTPNVQVTYLDGTSEVIPKTALLKVWMEGRNSKRRWKYN
C3655748C3655748__gene_215694F070224MKRLLFLLLTLLHYTAWSQVYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNAGDPLVIENFFAYYAAEFPKMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAYTVH
C3678108C3678108__gene_229127F078842MIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNELFVLSDIILSAKTYGDTCFMDAESYSPEAKKTYDEAVREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKARNESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLGCDFLEYIKNLSSSVFCDNLQKALVRCSDSHKQVILNRSTLNAILGGCVIGGKGWLEMADSARIRQMVNSIELDIYEVDS
SRS013252_Baylor_scaffold_13730SRS013252_Baylor_scaffold_13730__gene_19812F095630MRYSPLYKTSKDNGLLAHVYEHLLAQYVLKYLQDRGFFISSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQAFDKHTIPEKAVRRVVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQGEMTYRKSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVMQAVALNFLVAVRENYTVYDRGDQWSEASLSVGYRMFLGLAKEDKQITSQLKHEFAAYIQYLLKSPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI
SRS013252_Baylor_scaffold_25858SRS013252_Baylor_scaffold_25858__gene_36688F097526MTENSTMATTIYTQDDYCRLCERLNDDTVAALLHAHIDAFAADGNRQLLKRLTEAMRIAAEFEQAGRNGHPDPAELERRERWDSHCKRLQQHARMAGDQITNADNAAVSRLTKQCEKNGSRDTAIPSPHDDGYGFTAGLRDFPLNASQTALLWRMAVLTIAEMTDTTPELTAHYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLLSAAKAYENRNTDNRLEDAMTK
SRS013252_Baylor_scaffold_42115SRS013252_Baylor_scaffold_42115__gene_59130F051211LLKQELQHIGITSQLLIGVFDWQDLPIPERILNLRRQRHERHVILRIFIDGSTYNIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRSKLFRGNPKEFYIAIDKWLADTRAHHSS
SRS013252_Baylor_scaffold_48066SRS013252_Baylor_scaffold_48066__gene_67574F071327MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGTISEVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASEFSSYFKLFEYGIIILTCAGMITYVYIFLKNNQTLTLKIVVIALATALLFEYAYP
SRS013252_Baylor_scaffold_50700SRS013252_Baylor_scaffold_50700__gene_71270F085821MNDVFERLAPLAQTKKQQTAVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHNLLNLWYESTRRQILEQDNGKHDEAYIDEWVKANVNKTLSTIRSGETIASCKEDVAKHSRTLNDEYEQNIGLLDEYCRALLYTAETTQSQQELVAQTQNHIALLKDLYKK
SRS013252_Baylor_scaffold_51062SRS013252_Baylor_scaffold_51062__gene_71803F074985MTRSVISEEDIVELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSDFDELYIDQTFRKMTPVAFTHNNQSWTVMGLELASAETGWFIYLKRRDSDFMTRLNFNRDQKFLYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS013252_Baylor_scaffold_63115SRS013252_Baylor_scaffold_63115__gene_94976F030786MKRTRIHKVVFQMLVVMVVTGSLQMLLKNGSATKGGNTMGTKKISLADITDGDDSKEGAIKVKYFDDDGADKIFENNNNRILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC
SRS013252_Baylor_scaffold_63796SRS013252_Baylor_scaffold_63796__gene_96950F101358MTEKYSASHGAENQAPPPLPPQPEHLLTQPITTDGMPQERATHPDTYIIPKHENVPQYLWNVLRSSGQLDEGWIDREIINKDDVTLVRMTKLVNRSNIYQLEKCVPLAVLQEQNIDFTNAYLQKAYGVMVKDGRLQPAADTTHATHQNDSTDEQETEVLLAQRGDTYDHLGGDSARQLVGSVAAKASGEVDNSPLVQRALECIR
SRS013252_Baylor_scaffold_9696SRS013252_Baylor_scaffold_9696__gene_13997F103430MIEQITIKAFIGSDNKTKKLEVDKIISIVNTNHEAFTLDYPVVGYWRGEAEETAVLYLSDDRQRVMNTLSELKEVLDQEAIAYQIENDLQLI
SRS013252_Baylor_scaffold_9696SRS013252_Baylor_scaffold_9696__gene_14008F084362MSLMNCTFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSETEAEQKGFWWEK
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