Sample 7000000091

Overview

Basic Information
IMG/M Taxon OID	7000000091 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052567 \| Ga0027979
Sample Name	Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 861967750
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	9332063
Sequencing Scaffolds	5
Novel Protein Genes	5
Associated Families	5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F051214	Metagenome	144	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N

Family

Category

Number of Sequences

3D Structure?

F018385

Metagenome

235

F027205

Metagenome

195

F051214

Metagenome

144

F071329

Metagenome

122

F074985

Metagenome

119

Scaffold	Taxonomy	Length	IMG/M Link
C907619	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	525	Open in IMG/M
SRS045254_WUGC_scaffold_1965	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	548	Open in IMG/M
SRS045254_WUGC_scaffold_3821	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	687	Open in IMG/M
SRS045254_WUGC_scaffold_4491	All Organisms → Viruses → Predicted Viral	1093	Open in IMG/M
SRS045254_WUGC_scaffold_5938	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	943	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

C907619

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

525

Open in IMG/M

SRS045254_WUGC_scaffold_1965

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

548

Open in IMG/M

SRS045254_WUGC_scaffold_3821

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

687

Open in IMG/M

SRS045254_WUGC_scaffold_4491

All Organisms → Viruses → Predicted Viral

1093

Open in IMG/M

SRS045254_WUGC_scaffold_5938

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

943

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
C907619	C907619__gene_14079	F018385	GLHPWSLSLISGTETMMAENRWDPYAEVPIETHRDPVKDDHLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNELVFMPDSGRKIITQLFEKEVK
SRS045254_WUGC_scaffold_1965	SRS045254_WUGC_scaffold_1965__gene_414	F027205	EEFERKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK
SRS045254_WUGC_scaffold_3821	SRS045254_WUGC_scaffold_3821__gene_1332	F071329	YSKGKLMLPVAKIIISGLSSIGAGMIASRLTKPLVSNANGIAKILLWFGSVGTGVAASAIVSREVELQFDATVKAVQEARDHVEIED
SRS045254_WUGC_scaffold_4491	SRS045254_WUGC_scaffold_4491__gene_1789	F074985	MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRIYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSNFEELYIDQTFRRLTPVIFRHFDHSWIVMGLELSDSEEAEWFIYLKRQNGEGMTRVHFTKDQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDH
SRS045254_WUGC_scaffold_5938	SRS045254_WUGC_scaffold_5938__gene_3378	F051214	AFLKGAHMPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYICNNREYQIACEFLRQIMHDKIDLKDEWIA

Scaffold ID

Protein ID

Family

Sequence

C907619

C907619__gene_14079

F018385

GLHPWSLSLISGTETMMAENRWDPYAEVPIETHRDPVKDDHLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNELVFMPDSGRKIITQLFEKEVK

SRS045254_WUGC_scaffold_1965

SRS045254_WUGC_scaffold_1965__gene_414

F027205

EEFERKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK

SRS045254_WUGC_scaffold_3821

SRS045254_WUGC_scaffold_3821__gene_1332

F071329

YSKGKLMLPVAKIIISGLSSIGAGMIASRLTKPLVSNANGIAKILLWFGSVGTGVAASAIVSREVELQFDATVKAVQEARDHVEIED

SRS045254_WUGC_scaffold_4491

SRS045254_WUGC_scaffold_4491__gene_1789

F074985

MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRIYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSNFEELYIDQTFRRLTPVIFRHFDHSWIVMGLELSDSEEAEWFIYLKRQNGEGMTRVHFTKDQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDH

SRS045254_WUGC_scaffold_5938

SRS045254_WUGC_scaffold_5938__gene_3378

F051214

AFLKGAHMPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYICNNREYQIACEFLRQIMHDKIDLKDEWIA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000091: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 861967750

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences