Sample 7000000095

Overview

Basic Information
IMG/M Taxon OID	7000000095 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052571 \| Ga0031053
Sample Name	Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764305738
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	90743470
Sequencing Scaffolds	6
Novel Protein Genes	6
Associated Families	6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F076191	Metagenome	118	N
F077405	Metagenome	117	N
F092232	Metagenome	107	N
F097525	Metagenome	104	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Family

Category

Number of Sequences

3D Structure?

F076191

Metagenome

118

F077405

Metagenome

117

F092232

Metagenome

107

F097525

Metagenome

104

F101360

Metagenome

102

F103434

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
C1807988	Not Available	930	Open in IMG/M
C1843946	All Organisms → Viruses → Predicted Viral	3846	Open in IMG/M
C1847064	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9412	Open in IMG/M
SRS018975_WUGC_scaffold_38758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1582	Open in IMG/M
SRS018975_WUGC_scaffold_38849	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	528	Open in IMG/M
SRS018975_WUGC_scaffold_49577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	21963	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

C1807988

Not Available

930

Open in IMG/M

C1843946

All Organisms → Viruses → Predicted Viral

3846

Open in IMG/M

C1847064

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

9412

Open in IMG/M

SRS018975_WUGC_scaffold_38758

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae

1582

Open in IMG/M

SRS018975_WUGC_scaffold_38849

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales

528

Open in IMG/M

SRS018975_WUGC_scaffold_49577

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

21963

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
C1807988	C1807988__gene_132564	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIKENNHHYKKPMICVRSAHDNRELKDVIHLLILAGGNEIPSNHYGTLRDA
C1843946	C1843946__gene_149567	F092232	MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGSQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDVDRILQSFVAAFIISINKYATKKFTLDNIYNTDFWICKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRNPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED
C1847064	C1847064__gene_151690	F101360	VSKENALRRAAIAAHIAKVASQEKKKALKELEEYMPPGDTSKPTIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAASLDGFIKQTGEVPDGVEVVHGDPRISVRFSTAQEEAIRDLISTGDISLLEIEGGDA
SRS018975_WUGC_scaffold_38758	SRS018975_WUGC_scaffold_38758__gene_53366	F077405	PTELFPRLLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQKQKVRLK
SRS018975_WUGC_scaffold_38849	SRS018975_WUGC_scaffold_38849__gene_53476	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLDLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYELTFPLDDKTLAMIIKELGEAVTSFKKQ
SRS018975_WUGC_scaffold_49577	SRS018975_WUGC_scaffold_49577__gene_77086	F103434	VVEVTLAVVKEGRTGRRFERGETFVVDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR

Scaffold ID

Protein ID

Family

Sequence

C1807988

C1807988__gene_132564

F076191

MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIKENNHHYKKPMICVRSAHDNRELKDVIHLLILAGGNEIPSNHYGTLRDA

C1843946

C1843946__gene_149567

F092232

MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGSQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDVDRILQSFVAAFIISINKYATKKFTLDNIYNTDFWICKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRNPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED

C1847064

C1847064__gene_151690

F101360

VSKENALRRAAIAAHIAKVASQEKKKALKELEEYMPPGDTSKPTIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAASLDGFIKQTGEVPDGVEVVHGDPRISVRFSTAQEEAIRDLISTGDISLLEIEGGDA

SRS018975_WUGC_scaffold_38758

SRS018975_WUGC_scaffold_38758__gene_53366

F077405

PTELFPRLLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQKQKVRLK

SRS018975_WUGC_scaffold_38849

SRS018975_WUGC_scaffold_38849__gene_53476

F097525

MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLDLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYELTFPLDDKTLAMIIKELGEAVTSFKKQ

SRS018975_WUGC_scaffold_49577

SRS018975_WUGC_scaffold_49577__gene_77086

F103434

VVEVTLAVVKEGRTGRRFERGETFVVDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000095: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764305738

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences