NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000099

7000000099: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 604812005



Overview

Basic Information
IMG/M Taxon OID7000000099 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052575 | Ga0031320
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 604812005
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size66335924
Sequencing Scaffolds13
Novel Protein Genes13
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria4
All Organisms → cellular organisms → Bacteria1
Not Available1
All Organisms → Viruses → Predicted Viral2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4161
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033081Metagenome178Y
F040149Metagenome162N
F043235Metagenome156N
F045567Metagenome152N
F051210Metagenome / Metatranscriptome144Y
F067846Metagenome125Y
F073671Metagenome120N
F078842Metagenome116N
F089055Metagenome109Y
F092232Metagenome107N
F094007Metagenome106N
F098763Metagenome103N
F099453Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C3265826All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria718Open in IMG/M
C3272937All Organisms → cellular organisms → Bacteria811Open in IMG/M
C3289035Not Available1277Open in IMG/M
C3291011All Organisms → Viruses → Predicted Viral1421Open in IMG/M
C3292389All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1549Open in IMG/M
C3296045All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4162255Open in IMG/M
C3296549All Organisms → Viruses → Predicted Viral2434Open in IMG/M
SRS055426_LANL_scaffold_33304All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1763Open in IMG/M
SRS055426_LANL_scaffold_38682All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria724Open in IMG/M
SRS055426_LANL_scaffold_44331All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria939Open in IMG/M
SRS055426_LANL_scaffold_48409All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae622Open in IMG/M
SRS055426_LANL_scaffold_55648All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses45748Open in IMG/M
SRS055426_LANL_scaffold_56029All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae666Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C3265826C3265826__gene_118057F089055LKVEKMNSTPECVTKTPEIEAREKLAAIFSDAEQRGDNSKVNPELGKTAIDIENTSKMDSADNGAVDFCNQALGSYGKSLDYINNSPLETVQAIGNSLQLFREDKTKESCK
C3272937C3272937__gene_120805F040149VADEGAKELRWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLTSVWSHDSEDAIDYFIYDVLVPEGHALTAVRERETVVAQLLNIHRYVYYP
C3289035C3289035__gene_127235F073671MNKEQAEHELAELHEKERSLEKALELVREKIRELVNYMDKNKGQK
C3291011C3291011__gene_128051F092232KLLKVTYYVGCTKDEETFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTATSAKTQSITLKTNSNAVKMLRNFIDLNTTKEESIRLAMFSVYLFDHKVTLFEYYLARFGWYDTLEKFNFQDIIRITDYDIDNPEYYTFAIANSHMKSPFYISAVKSFVDNDRILQSFIASFQRAIMLFATKKTTLDQIYTTQFWIQKLGFNFVSSETSTFTKGNAIIESLENSYDIPTKKRLRLPDEIKADIYSVLKWMACEFSSIRLKNNLDASTKRIRWSEYIAAMYIMLINIKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNHGVYEWNSFTNEEEPNVWDENFSKMLNVYREEKGYTSAIMLAEDAGLELTDTRDPEAVAFDAQLLGQTIAMVAR
C3292389C3292389__gene_128617F078842MIISSIYKTADNDGLIAHIYEHLLAQYVLKRLQDNEFFVLGDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDAALRAASECGIEMNRNIAEVDRSELSKKLREVQISPWRKQIDMAYRKAHNESSVNTLFHTSYVKYSKESDDLFREYVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEVSISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSVRIRQMVNSIELDIYEVNS
C3296045C3296045__gene_130327F099453MLRRKDMNRFDIIELAQQTITFVHSAFNGKVNALDPYTRLNFVSGYLDKKTNIARTTPYGCIYVSLEAFADTVEAYKFIDTDQIRNLALEIVIHELTHVDQLIDYRYIKFNNGYREEIERQCVKQSCQWILDNIQFIRSLGLVVIPEVYEERLVGLSDVTYAFKNPVVIAMSKLEHMIGKKFKEFNSNDIEIHYVDRLKNYYKIPVCVNRMYQNSQNLNDLGERLLNDKQYTIEYMEYGNSKLVIKITQGA
C3296549C3296549__gene_130586F067846MSIIADWERQEFNKWDKQCSKEDDYNRAVEMEIEAIKENISNLDDDVICAFREKMLDYGEVINAFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEEDYRKGYILND
SRS055426_LANL_scaffold_33304SRS055426_LANL_scaffold_33304__gene_34231F043235MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRHPKGAVALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPYHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS055426_LANL_scaffold_38682SRS055426_LANL_scaffold_38682__gene_40950F033081QDPRPVFVWPRLVAAIGNVGYFSRRGFSVLAVGLIIVTIATIKILLFVPGLNQSVVSLLTRGLETFLPTGWATIAAWVVGTTGVFLIGSFTSSYTPSQRLLYSLEATGCGVYDTLLLLALIEEQAFRSGSEKWNWRERVRTSVCFGLLHIANIWYSFAAGIALSATGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL
SRS055426_LANL_scaffold_44331SRS055426_LANL_scaffold_44331__gene_48067F094007MKLKTVEVLELARPSRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYGDEDFTKRNRIIVEMCDLFGGIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLNYKKVRTAISLTKAGKKRSGWNKGCIDNNA
SRS055426_LANL_scaffold_48409SRS055426_LANL_scaffold_48409__gene_53385F098763MDRRTSLRVLSPALYLATKLFEAVVWTTIADDSSDEVEGKGGMNAVPTAVDE
SRS055426_LANL_scaffold_55648SRS055426_LANL_scaffold_55648__gene_65343F051210MNNYSQILGNSAMMDALRASSVSAEDARLRGNEYAKMFSRNEEMMDVFGLGGNNTNLLQKTFSGYSETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDLRSVLPNLGPDQYQDVQVMGGFELPVTVNAGTAAYSPLVGRKLIPGTVRVKVEDGTGKKYELIDNGQGSFMAVAGVLKTGTVNYLNGKIDFELTTAVPANGSITIVGKEDTTGTPSCTNGASNAHANDKRFIAKMQQIALNTVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKTINFKLVSTLEKGYAGNVMDDLDLSNAPASLASKFMDYRSRVDLFDAYLINVESALATKAVKGVTTTAYIAGNQAANQFQKGGVIGKFERNTKMTYISDLLGWYDGVPVLRSTDIQEKAGEGTFYAIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF
SRS055426_LANL_scaffold_56029SRS055426_LANL_scaffold_56029__gene_66195F045567MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
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