NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000126

7000000126: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763982056



Overview

Basic Information
IMG/M Taxon OID7000000126 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052610 | Ga0031106
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 763982056
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size62410203
Sequencing Scaffolds12
Novel Protein Genes17
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes4
All Organisms → Viruses1
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F036281Metagenome170N
F040149Metagenome162N
F043990Metagenome155N
F043991Metagenome155N
F049707Metagenome146N
F051213Metagenome144N
F055792Metagenome138N
F058221Metagenome135N
F067847Metagenome125N
F074985Metagenome119N
F084342Metagenome112N
F085821Metagenome111N
F095632Metagenome105N
F098763Metagenome103N
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C1755651All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales503Open in IMG/M
C1781156All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas658Open in IMG/M
C1787042All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas716Open in IMG/M
C1818220All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1700Open in IMG/M
SRS043772_WUGC_scaffold_15598All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena871Open in IMG/M
SRS043772_WUGC_scaffold_23996All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes14985Open in IMG/M
SRS043772_WUGC_scaffold_24027All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes11385Open in IMG/M
SRS043772_WUGC_scaffold_42294All Organisms → Viruses1365Open in IMG/M
SRS043772_WUGC_scaffold_44140Not Available1858Open in IMG/M
SRS043772_WUGC_scaffold_44286All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2607Open in IMG/M
SRS043772_WUGC_scaffold_5223All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes33046Open in IMG/M
SRS043772_WUGC_scaffold_8654All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium513Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C1755651C1755651__gene_87494F058221KMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNASFLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI
C1781156C1781156__gene_98029F084342SGQCGAKLFLLGGYLAIPIRRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE
C1787042C1787042__gene_100497F098763MDRRASLRILSPALYLATKLFEAVVRTTISYDSSDEVEGKGGMNAIPTTVDE
C1818220C1818220__gene_113851F051213MNLYKILGALILALSFVFTSCDWVANEPTIEGDSFKYFDSSAQRKSFRVVNASGKRYNHKVDWHIVGITQLGLKTYLTEKVDTLSNGNLKISYDWVSFTVKERKSVIEVEVQKNETGQARSVFFATSNSRYQAHLPNMIITQRAK
SRS043772_WUGC_scaffold_15598SRS043772_WUGC_scaffold_15598__gene_11094F085821MDHIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDASTQKKLRHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANINKTLSIIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRTLLCTAETTESQQELVAEIQSHIALLKDLYKKVNKIK
SRS043772_WUGC_scaffold_23996SRS043772_WUGC_scaffold_23996__gene_19478F095632MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLADAIDSMKKPQTN
SRS043772_WUGC_scaffold_24027SRS043772_WUGC_scaffold_24027__gene_19542F049707VVTEYKSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTIWYFRLVDGGIMTFSSREWEQRDDVNHLTTIHFQPKIRNNEKELT
SRS043772_WUGC_scaffold_42294SRS043772_WUGC_scaffold_42294__gene_44198F105377MRDFDDLPLLTPEEAFERAWEVGGSAHPVFDRGYRVRGLNSWKAIETLLLQNDVPDITVASFGLKRFEEILDAIAMLHERGWHLWQTSANVYVDGEKRPVQAIRAHYRGD
SRS043772_WUGC_scaffold_44140SRS043772_WUGC_scaffold_44140__gene_48286F040149VADEGAKEFRWKVLIKEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLAPVWSHDSEDAIHDFIYDASVPKGHTLTAVRERETVVMQLLNIHRMF
SRS043772_WUGC_scaffold_44140SRS043772_WUGC_scaffold_44140__gene_48287F055792MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALEGNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKAMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA
SRS043772_WUGC_scaffold_44286SRS043772_WUGC_scaffold_44286__gene_48666F049707VVSEYRSPHNDGHDPYILIWEYGSEVQQAEFSERWAEYEPDTGWTVWYFRLDDGRVMTFRALEWEQKDDVNHLTTIYFTPKEKQ
SRS043772_WUGC_scaffold_5223SRS043772_WUGC_scaffold_5223__gene_2338F067847MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELNNL
SRS043772_WUGC_scaffold_5223SRS043772_WUGC_scaffold_5223__gene_2345F018385MAEYENQWGPYKEHSIEKDRDPVLDDPIVYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYYEEVK
SRS043772_WUGC_scaffold_5223SRS043772_WUGC_scaffold_5223__gene_2348F043991MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLSDDTEVSFYKGLNVVYADINFTGGIRTILFKCRQKKNLTRFISRVLELAQGDSSNIHPDFRA
SRS043772_WUGC_scaffold_5223SRS043772_WUGC_scaffold_5223__gene_2352F036281MITLIKIDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNSKEYYDYWTAREGRPAPFFYESRQYHVKSFMRVPGSTDLWITAEREKDHWYTFHMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS043772_WUGC_scaffold_5223SRS043772_WUGC_scaffold_5223__gene_2353F074985MMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMYID
SRS043772_WUGC_scaffold_8654SRS043772_WUGC_scaffold_8654__gene_5167F043990MIKKLGIIFIFGVIILGIVVYANHKIERSWIEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEDLPPNGTPEQFLNTTNGYYKYVVDENDDWNF
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