Sample 7000000168

Overview

Basic Information
IMG/M Taxon OID	7000000168 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052669 \| Ga0031021
Sample Name	Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764042746
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	33826980
Sequencing Scaffolds	1
Novel Protein Genes	7
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N

Family

Category

Number of Sequences

3D Structure?

F018385

Metagenome

235

F027205

Metagenome

195

F036281

Metagenome

170

F043991

Metagenome

155

F051214

Metagenome

144

F074985

Metagenome

119

F081456

Metagenome

114

Scaffold	Taxonomy	Length	IMG/M Link
SRS015378_WUGC_scaffold_24186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	43820	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

SRS015378_WUGC_scaffold_24186

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

43820

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
SRS015378_WUGC_scaffold_24186	SRS015378_WUGC_scaffold_24186__gene_29658	F074985	MELTDGGWYKTPRIIKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYGVDTENAVLFTINTYPQESIILKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPIIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS015378_WUGC_scaffold_24186	SRS015378_WUGC_scaffold_24186__gene_29659	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEEQKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS015378_WUGC_scaffold_24186	SRS015378_WUGC_scaffold_24186__gene_29660	F027205	VASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQIRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK
SRS015378_WUGC_scaffold_24186	SRS015378_WUGC_scaffold_24186__gene_29663	F043991	MSKKNPSVIDYFDLNGDLNEEAHEFEEVKLEDYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQRDPSNVHPDFRA
SRS015378_WUGC_scaffold_24186	SRS015378_WUGC_scaffold_24186__gene_29664	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNTPDIIEYQLKNGDSFIITYDTIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI
SRS015378_WUGC_scaffold_24186	SRS015378_WUGC_scaffold_24186__gene_29666	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLWCEEVK
SRS015378_WUGC_scaffold_24186	SRS015378_WUGC_scaffold_24186__gene_29677	F081456	LGYRLFLEKGAHMFEEQPIYYILISLIFLIVFGAISFATWLVWLTNVAFFAKLVVTAIGFLLCAMTVILYTISAE

Scaffold ID

Protein ID

Family

Sequence

SRS015378_WUGC_scaffold_24186

SRS015378_WUGC_scaffold_24186__gene_29658

F074985

MELTDGGWYKTPRIIKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYGVDTENAVLFTINTYPQESIILKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPIIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID

SRS015378_WUGC_scaffold_24186

SRS015378_WUGC_scaffold_24186__gene_29659

F036281

MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEEQKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF

SRS015378_WUGC_scaffold_24186

SRS015378_WUGC_scaffold_24186__gene_29660

F027205

VASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQIRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK

SRS015378_WUGC_scaffold_24186

SRS015378_WUGC_scaffold_24186__gene_29663

F043991

MSKKNPSVIDYFDLNGDLNEEAHEFEEVKLEDYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQRDPSNVHPDFRA

SRS015378_WUGC_scaffold_24186

SRS015378_WUGC_scaffold_24186__gene_29664

F051214

MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNTPDIIEYQLKNGDSFIITYDTIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI

SRS015378_WUGC_scaffold_24186

SRS015378_WUGC_scaffold_24186__gene_29666

F018385

MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLWCEEVK

SRS015378_WUGC_scaffold_24186

SRS015378_WUGC_scaffold_24186__gene_29677

F081456

LGYRLFLEKGAHMFEEQPIYYILISLIFLIVFGAISFATWLVWLTNVAFFAKLVVTAIGFLLCAMTVILYTISAE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000168: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764042746

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences