Sample 7000000172

Basic Information
IMG/M Taxon OID	7000000172 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052676 \| Ga0030542
Sample Name	Human stool microbial communities from NIH, USA - visit 1, subject 160765029
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000172 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0052676 | Ga0030542

Sample Name

Human stool microbial communities from NIH, USA - visit 1, subject 160765029

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	173424013
Sequencing Scaffolds	11
Novel Protein Genes	12
Associated Families	12

Dataset Contents

Total Genome Size

173424013

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F042910	Metagenome	157	N
F043413	Metagenome	156	N
F043945	Metagenome	155	N
F051935	Metagenome	143	N
F061388	Metagenome	132	N
F068856	Metagenome	124	N
F070133	Metagenome	123	N
F074899	Metagenome / Metatranscriptome	119	N
F078003	Metagenome	117	N
F090515	Metagenome	108	N
F091068	Metagenome	108	N
F100397	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
C3379351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1187	Open in IMG/M
C3440265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5469	Open in IMG/M
SRS020869_Baylor_scaffold_10740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2097	Open in IMG/M
SRS020869_Baylor_scaffold_16683	All Organisms → cellular organisms → Bacteria	11654	Open in IMG/M
SRS020869_Baylor_scaffold_1727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3550	Open in IMG/M
SRS020869_Baylor_scaffold_17282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	907	Open in IMG/M
SRS020869_Baylor_scaffold_19817	All Organisms → cellular organisms → Bacteria	3801	Open in IMG/M
SRS020869_Baylor_scaffold_3869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9935	Open in IMG/M
SRS020869_Baylor_scaffold_6194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	11504	Open in IMG/M
SRS020869_Baylor_scaffold_6420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1440	Open in IMG/M
SRS020869_Baylor_scaffold_9008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5179	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3379351	C3379351__gene_216622	F070133	LLAMMVMMWGMAGAQASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFTEGEKSELQEMWMELFDSVGTSLLSAKLGKFNPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE
C3440265	C3440265__gene_267156	F043413	EHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLMAVGVAAAKLASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVDVAMNVQPKAGKQVFMDMEVTAECAGQTYTLEIEGCGGGDFMSGMFLPDGTGSWSDSPFGFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGADTLEAYVQNNWRQQIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADEYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGQTEAGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGERWDACHPDAEKGFTLELQE
SRS020869_Baylor_scaffold_10740	SRS020869_Baylor_scaffold_10740__gene_27088	F042910	VAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDTAITTLTVSAAGKISFQGLTLAPGAAIRIHHNAGVFAAEMVSDDSTVSILPYRTPESADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC
SRS020869_Baylor_scaffold_16683	SRS020869_Baylor_scaffold_16683__gene_42060	F043945	MAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDVIWSEALKQSGYYGQVMLLSGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVAELNYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAQYGLYVIAKDKTDEYQIVWFDLDTGKGEMLEFALEDDENSHLLTDMPGIFQWSGTSSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNSAMYFVHDNTVWVMEYDEENSQFSEPHGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGEVE
SRS020869_Baylor_scaffold_16683	SRS020869_Baylor_scaffold_16683__gene_42062	F091068	MNEKNQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKHRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMEPAKEERTANVPRMDVPDGWEGLFFPTFLPDDLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWSEGKRMLRVTSIGLPADEAVLVAQSVKKIFAE
SRS020869_Baylor_scaffold_1727	SRS020869_Baylor_scaffold_1727__gene_4883	F068856	AHRGQESVKDSGASAEGNVLAAAHAVLGKGRKGMKRLTSILLALLMLVGMALAEETPDAALGDWYALPSDETVLRLTLREDGTFFFGTEGISGIEGKWRKTTDGEYNLAYTNRSSSLLDVIMSMVDSQAPAPDMTMTARLTESGLDVFYGSTAEGAVVHMARDAEELRTERTPRTDTPLEAFAGTWTMETMFLGTMQLTYTPEMGERQVFCTIDGLTMFPGAGLESFPEGTSFPLTFEDGVLRTTIPLTVQMAASSALVKEIVVDYDLTFFQTADGSLYATLRLSDVPDNPETMFLLVPMEKE
SRS020869_Baylor_scaffold_17282	SRS020869_Baylor_scaffold_17282__gene_43971	F051935	LLAMMVMMEGISCAVAENTNPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAENLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWTLQNFSAMPYGNSDWTYIYFDFVDENQKRWNLMLNLGDGYVSSFGTISHYVEGYGTTYINMNYDRGLEFLIDAPAYSRFSYEVYPVERYSFGVEDFDLATCPLTMQEFLVPAIVTCGEEGAGLYIMVQQDVQPIVTLADGDAIEAIPQKWELDWTIVYYQGNYLFMKTENCKMEE
SRS020869_Baylor_scaffold_19817	SRS020869_Baylor_scaffold_19817__gene_54323	F078003	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDALGTEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMANMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPYTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNTGNEQEKISGQ
SRS020869_Baylor_scaffold_3869	SRS020869_Baylor_scaffold_3869__gene_10771	F100397	MKKLIAILVLSLSLILCLTACGSKMPYDLSETASVELHAYNNDSTEPFAKIVVDGEDVATIVEMFNSLKLKEMKYTEPSIRGYEFWFRDENGSEIVKIELPYGPSPWLVVGGTEYPYQDVNGGVDVDYLAQLVDMTISAGPMQPEDGVDHNAPVEPLFYKSAPGLSIQHDGQSVRALPGTSSWQYMNPDGTSTGIEADSMHPLDAKEYMPVLPAV
SRS020869_Baylor_scaffold_6194	SRS020869_Baylor_scaffold_6194__gene_16473	F061388	MWEEYASQFRATDMRGGEHGAYYAPMDDSVHLNIREVAQGDSIHTPYGTLFHEYGHMTDYLIARSAGQYRYSAYSDLFQGIDAGGKPILRGGSAGGLLGRTAKDELAGHLARIQRQNPTLTTKQAARELTNEAMHKYSMRDRSDISDMLEGAGIGIAYPLGAGHGLD
SRS020869_Baylor_scaffold_6420	SRS020869_Baylor_scaffold_6420__gene_17061	F090515	VTTCCKFGPKTALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS
SRS020869_Baylor_scaffold_9008	SRS020869_Baylor_scaffold_9008__gene_23188	F074899	PHRDPHGEMSGWKQWSKQAVTSSFLDKKPPKSLVQQGLEGSTPVGKDEVGSSNLPSSSNKTL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000172: Human stool microbial communities from NIH, USA - visit 1, subject 160765029

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences