Sample 7000000180

Overview

Basic Information
IMG/M Taxon OID	7000000180 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052685 \| Ga0027954
Sample Name	Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159490532
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	25494081
Sequencing Scaffolds	7
Novel Protein Genes	7
Associated Families	5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	1
Not Available	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F054109	Metagenome	140	N
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F081510	Metagenome	114	N
F105377	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

F054109

Metagenome

140

F067846

Metagenome

125

F073671

Metagenome

120

F081510

Metagenome

114

F105377

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
C1369258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	587	Open in IMG/M
C1370132	Not Available	603	Open in IMG/M
SRS017013_Baylor_scaffold_12107	All Organisms → Viruses	606	Open in IMG/M
SRS017013_Baylor_scaffold_14023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	6042	Open in IMG/M
SRS017013_Baylor_scaffold_23037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	898	Open in IMG/M
SRS017013_Baylor_scaffold_23384	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	57110	Open in IMG/M
SRS017013_Baylor_scaffold_23698	All Organisms → Viruses → Predicted Viral	3678	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

C1369258

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus

587

Open in IMG/M

C1370132

Not Available

603

Open in IMG/M

SRS017013_Baylor_scaffold_12107

All Organisms → Viruses

606

Open in IMG/M

SRS017013_Baylor_scaffold_14023

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae

6042

Open in IMG/M

SRS017013_Baylor_scaffold_23037

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae

898

Open in IMG/M

SRS017013_Baylor_scaffold_23384

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

57110

Open in IMG/M

SRS017013_Baylor_scaffold_23698

All Organisms → Viruses → Predicted Viral

3678

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
C1369258	C1369258__gene_44993	F067846	MESLQAQWERKTFNDYDRRCCAEDAYNEAVEREIECIEEDISNGDSEELWKFSEKAFEDDDFVKAIALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND
C1370132	C1370132__gene_45309	F054109	MVGRPKTKRGMKVHAAFKIYPDDKARVQAMAEKLDISLSSYINKAVLEKVERDEKSED
SRS017013_Baylor_scaffold_12107	SRS017013_Baylor_scaffold_12107__gene_12200	F105377	VRDFDKLPLLTPEEAFERAWEEGGAARPVFDRGYQVRNLNDWKAIETLLRQNDVPDITIASFGLKRFEDILDALAMLHERGWRLWQTAANVYVGGERKTVQAIRAHYRGI
SRS017013_Baylor_scaffold_14023	SRS017013_Baylor_scaffold_14023__gene_14511	F067846	MESLQAQWERKTFNDHDRRCCAEDAYNEAVEREIECIEEDISNGDSEELCKFSEKAFEDDDFVKAIALGNDVEEMRICILKSLAEERIEQRRKDYEKGFILND
SRS017013_Baylor_scaffold_23037	SRS017013_Baylor_scaffold_23037__gene_27330	F073671	MNKEQAKHELAELHEKERSLEKALELVREKIRELVNCTDKNKV
SRS017013_Baylor_scaffold_23384	SRS017013_Baylor_scaffold_23384__gene_28053	F081510	MKLPKLPNMQTIKSTAKSAMVTTKILGKKYAPFVLLGVGLVGYGYSVYAGVKSGKKLEATKAKYEAKDAAGEEYTRMEVVKDVAKDVAIPVAVATASTAAIVLGFAIQTNRLKAVSSALAIVTEEHARYRLRAKEVLDEATFKKIDAPLETKTVELDGQEVEVESIVPNEGDFYGQWFKYSSNYVSDDPDYNESYIKEAETYLVNRMMKKGVLTFGEVLDKLGFDVPRAALPFGWTDTDDFYIEWDAHEVFDDVKQEYDLQFYVRWKTPRNLYATTSFKDFVPKKTRKELN
SRS017013_Baylor_scaffold_23698	SRS017013_Baylor_scaffold_23698__gene_28922	F073671	MEKEQAEHELAELHEQERSLEKALELVREKIRELVNYTNKNKG

Scaffold ID

Protein ID

Family

Sequence

C1369258

C1369258__gene_44993

F067846

MESLQAQWERKTFNDYDRRCCAEDAYNEAVEREIECIEEDISNGDSEELWKFSEKAFEDDDFVKAIALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND

C1370132

C1370132__gene_45309

F054109

MVGRPKTKRGMKVHAAFKIYPDDKARVQAMAEKLDISLSSYINKAVLEKVERDEKSED

SRS017013_Baylor_scaffold_12107

SRS017013_Baylor_scaffold_12107__gene_12200

F105377

VRDFDKLPLLTPEEAFERAWEEGGAARPVFDRGYQVRNLNDWKAIETLLRQNDVPDITIASFGLKRFEDILDALAMLHERGWRLWQTAANVYVGGERKTVQAIRAHYRGI

SRS017013_Baylor_scaffold_14023

SRS017013_Baylor_scaffold_14023__gene_14511

F067846

MESLQAQWERKTFNDHDRRCCAEDAYNEAVEREIECIEEDISNGDSEELCKFSEKAFEDDDFVKAIALGNDVEEMRICILKSLAEERIEQRRKDYEKGFILND

SRS017013_Baylor_scaffold_23037

SRS017013_Baylor_scaffold_23037__gene_27330

F073671

MNKEQAKHELAELHEKERSLEKALELVREKIRELVNCTDKNKV

SRS017013_Baylor_scaffold_23384

SRS017013_Baylor_scaffold_23384__gene_28053

F081510

MKLPKLPNMQTIKSTAKSAMVTTKILGKKYAPFVLLGVGLVGYGYSVYAGVKSGKKLEATKAKYEAKDAAGEEYTRMEVVKDVAKDVAIPVAVATASTAAIVLGFAIQTNRLKAVSSALAIVTEEHARYRLRAKEVLDEATFKKIDAPLETKTVELDGQEVEVESIVPNEGDFYGQWFKYSSNYVSDDPDYNESYIKEAETYLVNRMMKKGVLTFGEVLDKLGFDVPRAALPFGWTDTDDFYIEWDAHEVFDDVKQEYDLQFYVRWKTPRNLYATTSFKDFVPKKTRKELN

SRS017013_Baylor_scaffold_23698

SRS017013_Baylor_scaffold_23698__gene_28922

F073671

MEKEQAEHELAELHEQERSLEKALELVREKIRELVNYTNKNKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000180: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159490532

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences