NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000205

7000000205: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158742018



Overview

Basic Information
IMG/M Taxon OID7000000205 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052717 | Ga0027920
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 158742018
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size29684592
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043235Metagenome156N
F047508Metagenome149N
F084342Metagenome112N
F090517Metagenome108N
F094006Metagenome106Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C1368854All Organisms → cellular organisms → Bacteria1273Open in IMG/M
SRS011247_Baylor_scaffold_13865All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1970Open in IMG/M
SRS011247_Baylor_scaffold_23776All Organisms → cellular organisms → Bacteria4519Open in IMG/M
SRS011247_Baylor_scaffold_24036All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1588Open in IMG/M
SRS011247_Baylor_scaffold_24502All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae3870Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C1368854C1368854__gene_57358F047508ARTVEAIATDAVLVIEFVGEPVHIGMLGHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS011247_Baylor_scaffold_13865SRS011247_Baylor_scaffold_13865__gene_12854F090517MNRRILSFCGLLLGLLFLASSCKSKKDTPRLQLSSVELRQTAWYGTLEYKNPKRDNYSVYLNFLSDSEVEVIADDWIDPTDSQVRYYYTITDGIFTLKAQVNRELHPQMDQDTWYLIRKEPSLLVFQANAGNPAAEATLTLRKKL
SRS011247_Baylor_scaffold_23776SRS011247_Baylor_scaffold_23776__gene_26064F043235VQAQIFSLSQALKHGIGDCPDTDLKRISIVDEFSTQLTDALLDRPDGSKRELHQGAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRRLRSGLGIVTRHPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVYSLIQVSGAAILVKEVKDGMYMPYHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLFPGSAH
SRS011247_Baylor_scaffold_24036SRS011247_Baylor_scaffold_24036__gene_26646F084342VPAQCGAKLFLLGGYLTVPIRRPFFAKALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE
SRS011247_Baylor_scaffold_24502SRS011247_Baylor_scaffold_24502__gene_27485F094006MWSALEPAGPTGALYESAVCVEAHIGYLQTGGIACRGLFAFGRRDLLAVAELGAEAPHAINMYDIALCKPLSELF
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