NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000207

7000000207: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158742018



Overview

Basic Information
IMG/M Taxon OID7000000207 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052719 | Ga0031230
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 158742018
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size55616492
Sequencing Scaffolds15
Novel Protein Genes15
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3
Not Available2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip21

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043235Metagenome156N
F043990Metagenome155N
F045567Metagenome152N
F047127Metagenome150N
F051213Metagenome144N
F055792Metagenome138N
F061925Metagenome131N
F063777Metagenome129N
F064818Metagenome128N
F064819Metagenome128N
F090517Metagenome108N
F094006Metagenome106Y
F099454Metagenome103N
F105376Metagenome100N
F105380Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2021761All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales560Open in IMG/M
C2025341All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales586Open in IMG/M
C2029464All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae622Open in IMG/M
C2037845All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium721Open in IMG/M
C2048465Not Available959Open in IMG/M
SRS011243_Baylor_scaffold_14022All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1170Open in IMG/M
SRS011243_Baylor_scaffold_17585Not Available3988Open in IMG/M
SRS011243_Baylor_scaffold_27445All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae2801Open in IMG/M
SRS011243_Baylor_scaffold_27822All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae2283Open in IMG/M
SRS011243_Baylor_scaffold_39401All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae919Open in IMG/M
SRS011243_Baylor_scaffold_40114All Organisms → Viruses → Predicted Viral1415Open in IMG/M
SRS011243_Baylor_scaffold_42417All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii992Open in IMG/M
SRS011243_Baylor_scaffold_46151All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium916Open in IMG/M
SRS011243_Baylor_scaffold_48422All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2328Open in IMG/M
SRS011243_Baylor_scaffold_48527All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip25120Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2021761C2021761__gene_91204F063777IPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEYLDDGYLFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFDKNTGKITVLTDIKDFFWLDFDSETKIINGYNNKEQIEIAISE
C2025341C2025341__gene_92299F047127MKKTFAFILLSIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIINIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK
C2029464C2029464__gene_93617F094006RARVAAMWSALEPAGPTGALYESAVCVEAHIGELQTGGIACRGLFAFGRRDLLAVAELGAEAPHAINMYDIALCKPLSELFGEELEYAFNFGA
C2037845C2037845__gene_96314F043990MIKKLGIIFTIGVVILGIVVYAGHKIEKSWIEGEFGVNTSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEDLPPNGIPKQFLNIANGYYKYVVDENDDRDFGILIVDTTRKEICIYNQIL
C2048465C2048465__gene_99681F105376MNEKPEVSAKEFGALQAKVEYIKDGVDKHTVMLERIENIARDNVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELKEEVQQTQVRRK
SRS011243_Baylor_scaffold_14022SRS011243_Baylor_scaffold_14022__gene_15253F099454MKASKLLWAVVMALTFVLTSCDRLTDEPTLEDRGYYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK
SRS011243_Baylor_scaffold_17585SRS011243_Baylor_scaffold_17585__gene_19231F055792VEIAGEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCALEEVRPVFVDEGDDGTEAGTTWGRYPLETLQKEGYILFEGSMLPCEACGVDSRSSVKSLDLEPRIIGKAIEPVALPDVTRLDESISLQGIGGLRDLLMTPDVSET
SRS011243_Baylor_scaffold_27445SRS011243_Baylor_scaffold_27445__gene_31252F043235MDEVVPSDEGHLLIDLCDDDPRRLRSGLGIVTRHPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVYSLIQVSGAAILVKEVKDGMYMPYHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLFPGSAH
SRS011243_Baylor_scaffold_27822SRS011243_Baylor_scaffold_27822__gene_31745F045567VRQRDGRDTLTEELEGGITPLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQAERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS011243_Baylor_scaffold_39401SRS011243_Baylor_scaffold_39401__gene_46843F061925MSWEYSINLDSEESVSSVVTDLKICELFSSSTTDYIDWKNPKSIDSTPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI
SRS011243_Baylor_scaffold_40114SRS011243_Baylor_scaffold_40114__gene_47767F051213GIKTLMKAYKLLWAVVVALTFVFTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEIQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK
SRS011243_Baylor_scaffold_42417SRS011243_Baylor_scaffold_42417__gene_50926F090517LGLLFLASSCKNKKDTPRLEFSSVELRQTVWNGTLEYKNPKRDSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQANAGNPDREATLTLRKKL
SRS011243_Baylor_scaffold_46151SRS011243_Baylor_scaffold_46151__gene_56914F064819MILKDNQGKDRIKFSDIIRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEELTRNLKNLSECKIRKFFFQNIDETIKIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIAIFSKEISQELEKYK
SRS011243_Baylor_scaffold_48422SRS011243_Baylor_scaffold_48422__gene_61908F064818MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYEGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQATEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK
SRS011243_Baylor_scaffold_48527SRS011243_Baylor_scaffold_48527__gene_62256F105380MTIVELDTSQYVKQGRIFKKFESNLLDSYMDGRQTQYNINLADLDDQISDGIVYADKSGKMIYKFSAKKIVQTAITKDLTISGLADEFKMDYYSFWVPDIYLLSYSGFNPGNGLCLAYRKKYEEYICLTNIFPDRREQENSYFPNGKKLETKSICTGSMMADIDSAEYAAWKNDAVTRASQYVNKFLSARGNADLNFVSSSLRSKVPSHDMKKFAEFLGSITKEQENVNTYEEFIEWTKNTKWLK
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