NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000226

7000000226: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763840445



Overview

Basic Information
IMG/M Taxon OID7000000226 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052744 | Ga0031013
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 763840445
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size109812736
Sequencing Scaffolds19
Novel Protein Genes21
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium4
All Organisms → cellular organisms → Bacteria5
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-101
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2751
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F030786Metagenome184N
F043990Metagenome155N
F049707Metagenome146N
F058221Metagenome135N
F061925Metagenome131N
F063777Metagenome129N
F064818Metagenome128N
F064819Metagenome128N
F070224Metagenome123N
F080165Metagenome115N
F081510Metagenome114N
F085821Metagenome111N
F089056Metagenome109N
F090516Metagenome108N
F095632Metagenome105N
F097526Metagenome104Y
F101358Metagenome102Y
F101359Metagenome102N
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2575210All Organisms → cellular organisms → Bacteria → Proteobacteria6357Open in IMG/M
SRS014578_WUGC_scaffold_12581All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1123Open in IMG/M
SRS014578_WUGC_scaffold_17103All Organisms → cellular organisms → Bacteria1189Open in IMG/M
SRS014578_WUGC_scaffold_23280All Organisms → Viruses4238Open in IMG/M
SRS014578_WUGC_scaffold_31219All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium13495Open in IMG/M
SRS014578_WUGC_scaffold_33677All Organisms → cellular organisms → Bacteria1053Open in IMG/M
SRS014578_WUGC_scaffold_3572All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2954Open in IMG/M
SRS014578_WUGC_scaffold_39313All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1047Open in IMG/M
SRS014578_WUGC_scaffold_40484All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-101501Open in IMG/M
SRS014578_WUGC_scaffold_46404All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1780Open in IMG/M
SRS014578_WUGC_scaffold_48118All Organisms → cellular organisms → Bacteria42713Open in IMG/M
SRS014578_WUGC_scaffold_56824Not Available706Open in IMG/M
SRS014578_WUGC_scaffold_59871All Organisms → cellular organisms → Bacteria1878Open in IMG/M
SRS014578_WUGC_scaffold_65201All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2755389Open in IMG/M
SRS014578_WUGC_scaffold_65488All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1026Open in IMG/M
SRS014578_WUGC_scaffold_66496All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium8365Open in IMG/M
SRS014578_WUGC_scaffold_67006All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris1143Open in IMG/M
SRS014578_WUGC_scaffold_6765All Organisms → cellular organisms → Bacteria2296Open in IMG/M
SRS014578_WUGC_scaffold_72004All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes11786Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2575210C2575210__gene_193061F101358MTEKYSASPAAKEETSASLPPRQPEHLLTQPITTDGTPQERATHPDTYSIPKRQDVPRHQWNVLRSSGQLDEGWVDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMIKDGRLQPVADTTHATHQNDSTDEQETEVLPAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSLLVERVLGRVE
SRS014578_WUGC_scaffold_12581SRS014578_WUGC_scaffold_12581__gene_13988F080165MKSIKILLLLLSLTACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLSYTFTRFILK
SRS014578_WUGC_scaffold_17103SRS014578_WUGC_scaffold_17103__gene_19468F090516ENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGVGYVYTVISGYDVSYNRMYMFGIHCFNGDFNVTYYDLDNDAETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYGDISEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMTLARILDLPLKAYFK
SRS014578_WUGC_scaffold_23280SRS014578_WUGC_scaffold_23280__gene_27381F105377VRDFDRLPLLTPEEAFERAREMGWNRPLFDHGYRVRGLNDWRAIETLLRQYDVEDAVIASFGLKRFEEIFDAFAMLHERGWHLWQTSANVYVGGELRTVPAIRARYRGD
SRS014578_WUGC_scaffold_31219SRS014578_WUGC_scaffold_31219__gene_38230F097526MRSTSTLSSKTTAIDPYTQDGYRRLCERLDDDTVAALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSRLTRQCEKNGSCDTAIPSPHDDGYGFTAGLRDIPLNTSQTALLWRMALLTIAEIADIAPELAAIYLNGTGGEHMGRALAEKTVYPVTVVSNLAWLLHEQHKSGQLQRDLRYITTALGSDVQGKPQ
SRS014578_WUGC_scaffold_33677SRS014578_WUGC_scaffold_33677__gene_41664F061925MSWEYSINLDSEESVSLVVMDLKNCELFSSSTTDYIDWKNPESMDDIPYDTRFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHLTDCDTDEEVTLEHIFRSVI
SRS014578_WUGC_scaffold_3572SRS014578_WUGC_scaffold_3572__gene_3235F030786MKRTKIHKVVFQMLVVMIMTSSLQLLLKNGSAIKGGNTMGTKKISLADITEGDDSTEGVLKVKYFGDGVDKIFENNNNKILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC
SRS014578_WUGC_scaffold_39313SRS014578_WUGC_scaffold_39313__gene_49756F085821MDHIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFKLLTADFFVAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYINAWNEASVNKTLSIIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRALLCTAETTESQQELVAETQNHIALLKDLYKKVNKIN
SRS014578_WUGC_scaffold_40484SRS014578_WUGC_scaffold_40484__gene_51524F058221MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSGLAQNASFLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI
SRS014578_WUGC_scaffold_46404SRS014578_WUGC_scaffold_46404__gene_60517F101359MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYK
SRS014578_WUGC_scaffold_48118SRS014578_WUGC_scaffold_48118__gene_63112F049707VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYGETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKEN
SRS014578_WUGC_scaffold_48118SRS014578_WUGC_scaffold_48118__gene_63133F095632MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSMKKSQTN
SRS014578_WUGC_scaffold_56824SRS014578_WUGC_scaffold_56824__gene_76718F022002MSRRLALTLGLLLALLLSLPSHARDRRSKVPINRTISGFTLGVTTPEEARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKE
SRS014578_WUGC_scaffold_59871SRS014578_WUGC_scaffold_59871__gene_81871F063777LKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFAILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKIIVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISE
SRS014578_WUGC_scaffold_65201SRS014578_WUGC_scaffold_65201__gene_91630F070224MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIIGFGDSLILENGFVHKADRYPNAKEYELYYKGTGEEITKEDFDSIKFSRMPTALREIKKYKLPRTKRFSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYNHPEACIIH
SRS014578_WUGC_scaffold_65201SRS014578_WUGC_scaffold_65201__gene_91631F070224MRRLLFLLLTLLHCTAWSQVYNAPDSLYVVISGVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDQNNLIVRKVGDPLVIENFFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYIDYDHPEAHMIH
SRS014578_WUGC_scaffold_65488SRS014578_WUGC_scaffold_65488__gene_92125F043990GVIILGIVVYADHKIESSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPEQFLNITNGYYKYVVDENDDRDFGILIVDTTRKEICIYYQIL
SRS014578_WUGC_scaffold_66496SRS014578_WUGC_scaffold_66496__gene_94098F064819MILKDSQGKIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRNLKDLSEYKIRKFFFKNIDETIEIVFSINDIGTIAIEGKMYDENYMNSINFSFQTDLNGIVTFSKEISQEIEKCK
SRS014578_WUGC_scaffold_67006SRS014578_WUGC_scaffold_67006__gene_95123F089056MNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
SRS014578_WUGC_scaffold_6765SRS014578_WUGC_scaffold_6765__gene_6863F064818MDKDEFLKELIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKKLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFG
SRS014578_WUGC_scaffold_72004SRS014578_WUGC_scaffold_72004__gene_106226F081510MKLPKLPNIQTIKSTAKSAMVTTKILGKKYAPVVLLGVGLVGYGYSLYAGIKSGKKLEATKAKYEAKDAAGEEYTRFEVVKDVAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMVTEEHARYRLRAKEVLDEATFKKIDAPMETKTVELDGKEVEVESIVPNEGDFYGQWFKYSSNYASDNPDYNESYIKEADKYLTDRMMKKGVLTFCEVLEELGFDVPRAALPFGWTDTDSFYIEWDAHEVFDEEKQEYDLQYYVRWKTPRNLYATTSIKDFVPKKTRKELN
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