Sample 7000000247

Overview

Basic Information
IMG/M Taxon OID	7000000247 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052765 \| Ga0031122
Sample Name	Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763840445
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	152766514
Sequencing Scaffolds	8
Novel Protein Genes	8
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae → Providencia → Providencia rettgeri	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F051211	Metagenome	144	N
F063777	Metagenome	129	N
F077403	Metagenome	117	N
F097526	Metagenome	104	Y
F101358	Metagenome	102	Y
F105377	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

F022002

Metagenome

216

F030786

Metagenome

184

F051211

Metagenome

144

F063777

Metagenome

129

F077403

Metagenome

117

F097526

Metagenome

104

F101358

Metagenome

102

F105377

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
C3691184	Not Available	800	Open in IMG/M
C3714917	Not Available	985	Open in IMG/M
SRS063999_LANL_scaffold_47112	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	700	Open in IMG/M
SRS063999_LANL_scaffold_50629	All Organisms → Viruses → Predicted Viral	4408	Open in IMG/M
SRS063999_LANL_scaffold_55819	Not Available	620	Open in IMG/M
SRS063999_LANL_scaffold_71263	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	565	Open in IMG/M
SRS063999_LANL_scaffold_86119	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	718	Open in IMG/M
SRS063999_LANL_scaffold_87288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae → Providencia → Providencia rettgeri	900	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

C3691184

Not Available

800

Open in IMG/M

C3714917

Not Available

985

Open in IMG/M

SRS063999_LANL_scaffold_47112

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

700

Open in IMG/M

SRS063999_LANL_scaffold_50629

All Organisms → Viruses → Predicted Viral

4408

Open in IMG/M

SRS063999_LANL_scaffold_55819

Not Available

620

Open in IMG/M

SRS063999_LANL_scaffold_71263

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales

565

Open in IMG/M

SRS063999_LANL_scaffold_86119

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium

718

Open in IMG/M

SRS063999_LANL_scaffold_87288

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae → Providencia → Providencia rettgeri

900

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
C3691184	C3691184__gene_236269	F097526	MTADNATAIAPYTQDGYRQLCERLDDDTVAALLHAHIRAFAADGNRQLLKRLTDAMRIAAEFEQACRNENPDPAEQARRARWDNQFRELQQQARMAHCEIVNADNAAVSHLTRQCEKNGSRDTAIPSPHDDGYGFTAGLRDFSLNASQTALLWRMAVLTIAEITETTPPLVASYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQ
C3714917	C3714917__gene_246881	F077403	FEVRWHREHNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGCWQFLLPDWEASGRLRDERIPLNVYQLRGKGSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM
SRS063999_LANL_scaffold_47112	SRS063999_LANL_scaffold_47112__gene_53919	F030786	NKVQMKRTRIHKVVFQMLVVMVVTSSLQLLLKNGSAAKDGSTMGTKKISLVDITDGDDSKEGAIKVKYFDDGVDKIFENNNNRILNTINGQHISFNSQSAEYSKPQLFLLYRSLKVDC
SRS063999_LANL_scaffold_50629	SRS063999_LANL_scaffold_50629__gene_58346	F105377	VRDFDKLPLLTPEEAFERAWEEGGSDHPVFDRGYRVRGLNDWKAIETLLRQNDVPDITVASFGLKRFEEIFDAFAMMSERGWRLWQTSANVYVGGERKTVQAIRAHYRGD
SRS063999_LANL_scaffold_55819	SRS063999_LANL_scaffold_55819__gene_65110	F022002	ISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYERCPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI
SRS063999_LANL_scaffold_71263	SRS063999_LANL_scaffold_71263__gene_85662	F063777	ALPPENNSFWMKLLLYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLEFDSETKTINGYN
SRS063999_LANL_scaffold_86119	SRS063999_LANL_scaffold_86119__gene_109793	F101358	MTEKYSASLPPRQPEHLLTQPITTDGMPQERTTHPDTHIIPKRQDVPRYQWNVLRSSGQLDEGWIDTEIIDENDVALVRMTKPVHRSNIDKLEKCVPLAVLQEQNIDFTNAYLQKAYGVMIKDGRLQPVADTTHATTSSQEQQTEVLLAQDEKYDR
SRS063999_LANL_scaffold_87288	SRS063999_LANL_scaffold_87288__gene_111952	F051211	MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLRVYRPHSLHERILSRLRSKFFRGNPKEFYTAIDKWLADTRTHQSS

Scaffold ID

Protein ID

Family

Sequence

C3691184

C3691184__gene_236269

F097526

MTADNATAIAPYTQDGYRQLCERLDDDTVAALLHAHIRAFAADGNRQLLKRLTDAMRIAAEFEQACRNENPDPAEQARRARWDNQFRELQQQARMAHCEIVNADNAAVSHLTRQCEKNGSRDTAIPSPHDDGYGFTAGLRDFSLNASQTALLWRMAVLTIAEITETTPPLVASYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQ

C3714917

C3714917__gene_246881

F077403

FEVRWHREHNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGCWQFLLPDWEASGRLRDERIPLNVYQLRGKGSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM

SRS063999_LANL_scaffold_47112

SRS063999_LANL_scaffold_47112__gene_53919

F030786

NKVQMKRTRIHKVVFQMLVVMVVTSSLQLLLKNGSAAKDGSTMGTKKISLVDITDGDDSKEGAIKVKYFDDGVDKIFENNNNRILNTINGQHISFNSQSAEYSKPQLFLLYRSLKVDC

SRS063999_LANL_scaffold_50629

SRS063999_LANL_scaffold_50629__gene_58346

F105377

VRDFDKLPLLTPEEAFERAWEEGGSDHPVFDRGYRVRGLNDWKAIETLLRQNDVPDITVASFGLKRFEEIFDAFAMMSERGWRLWQTSANVYVGGERKTVQAIRAHYRGD

SRS063999_LANL_scaffold_55819

SRS063999_LANL_scaffold_55819__gene_65110

F022002

ISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYERCPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI

SRS063999_LANL_scaffold_71263

SRS063999_LANL_scaffold_71263__gene_85662

F063777

ALPPENNSFWMKLLLYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLEFDSETKTINGYN

SRS063999_LANL_scaffold_86119

SRS063999_LANL_scaffold_86119__gene_109793

F101358

MTEKYSASLPPRQPEHLLTQPITTDGMPQERTTHPDTHIIPKRQDVPRYQWNVLRSSGQLDEGWIDTEIIDENDVALVRMTKPVHRSNIDKLEKCVPLAVLQEQNIDFTNAYLQKAYGVMIKDGRLQPVADTTHATTSSQEQQTEVLLAQDEKYDR

SRS063999_LANL_scaffold_87288

SRS063999_LANL_scaffold_87288__gene_111952

F051211

MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLRVYRPHSLHERILSRLRSKFFRGNPKEFYTAIDKWLADTRTHQSS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000247: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763840445

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences