NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000260

7000000260: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765074482



Overview

Basic Information
IMG/M Taxon OID7000000260 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052778 | Ga0031034
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 765074482
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size102029856
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Pasteurella → Pasteurella dagmatis1
All Organisms → Viruses → Predicted Viral4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium1
Not Available1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → Viruses1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F051211Metagenome144N
F051212Metagenome144N
F051214Metagenome144N
F071329Metagenome122N
F084362Metagenome112N
F090516Metagenome108N
F097490Metagenome104N
F101360Metagenome102N
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C4100035All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales513Open in IMG/M
C4133478All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium620Open in IMG/M
C4178224All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Pasteurella → Pasteurella dagmatis953Open in IMG/M
C4192349All Organisms → Viruses → Predicted Viral1245Open in IMG/M
C4205284All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium2048Open in IMG/M
C4208941All Organisms → Viruses → Predicted Viral2798Open in IMG/M
C4210778Not Available3718Open in IMG/M
C4211148All Organisms → Viruses → Predicted Viral3997Open in IMG/M
SRS016331_WUGC_scaffold_3005All Organisms → Viruses → Predicted Viral1776Open in IMG/M
SRS016331_WUGC_scaffold_37139All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1715Open in IMG/M
SRS016331_WUGC_scaffold_38077All Organisms → Viruses1057Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C4100035C4100035__gene_133075F051212MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSRL
C4133478C4133478__gene_150317F097490MKIDENKKEVLVEIRNNTENNYYLLSPVVSIMTKYLQHIGGEMIEGQIHHKKIDNIVCSVYIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNLFSNSKENKKMYFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C4178224C4178224__gene_175677F090516TDVIVGIGFLPHDISENTDFKKKILKKYGFSSATALAEDFRKRVLNFDEPIPENFEKDGIGYVYTVISGYDVFYNRMYMFGIHCFNGDFNVTYYDLENDAETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDRLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGVSEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSQYHLWLCHLDEGADAYLFLLFSEKDMPEIM
C4192349C4192349__gene_185003F018385MAEYVNRWDPYSELSIEKNRIPVLDDHLIYGTNVEHYTLTVYSPEGRVSKYWNARILKDDLGRCRIACPREGKILCFSWFDWDAHMFTHDGMNELVFTPKLNSRSPQSLWSKKEVK
C4205284C4205284__gene_194769F051211MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRSEFFRGNPKDFYTAIDKWLADTRAHQSS
C4208941C4208941__gene_198167F018385MAENKWDSYLEGSIEKDRDPALDDEIIYGVNVKHFNLTVYHPNGRVKKYWNARILKDYLGYCRIACPRDDKILSFNWFNWTAYMFTQSGVNELVFMPHSRRGIVSKLSQGN
C4208941C4208941__gene_198168F071329MLPVAKIILSGLTSIGAGMIASKLTKPLVSNSSGIAKILLWFGSVGTGIAASAIIAREVEKQFDETVAAVKEARSHVEIED
C4210778C4210778__gene_200271F084362MSLMNCAFTVRWSDEKNKPHAKTYATEVDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSETEAEQKGFWWEK
C4211148C4211148__gene_200766F101360MSKENALRKAAIAAHVAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISTSQEEAIRELISTGDISILEIESGDA
SRS016331_WUGC_scaffold_3005SRS016331_WUGC_scaffold_3005__gene_2407F051214FLKGAHMPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNTTDLIEYQLKNGDSFIVTYDPIHRIIIMRAFLHDEDITVKPIYIYNNREYQIACEFLRQIMHDKIDLKKEWLV
SRS016331_WUGC_scaffold_37139SRS016331_WUGC_scaffold_37139__gene_38582F051214MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDFEDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKKEWL
SRS016331_WUGC_scaffold_38077SRS016331_WUGC_scaffold_38077__gene_40385F105377VRAEMRDFDKLPLLTPEEAFERAMEMGWNRPLFDHGYRVRGLNDWRAIETLLRQYDVEDAVIASFGLKRFEEIFDAFAMLHERGWHLWQTSANVYVGGELRTVPAIRAHYRGD
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