NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000261

7000000261: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764508039



Overview

Basic Information
IMG/M Taxon OID7000000261 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052779 | Ga0031031
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 764508039
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size93895277
Sequencing Scaffolds20
Novel Protein Genes22
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphovirus contig891
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga gingivalis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027205Metagenome195N
F043991Metagenome155N
F047127Metagenome150N
F049707Metagenome146N
F051211Metagenome144N
F051212Metagenome144N
F051214Metagenome144N
F054111Metagenome140N
F058221Metagenome135N
F059076Metagenome134N
F061925Metagenome131N
F061926Metagenome131N
F080165Metagenome115N
F081456Metagenome114N
F081510Metagenome114N
F092231Metagenome107Y
F095632Metagenome105N
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2166895All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales504Open in IMG/M
C2180754All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphovirus contig89558Open in IMG/M
C2192348All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes617Open in IMG/M
C2232148All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1119Open in IMG/M
C2235104All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1215Open in IMG/M
C2247967All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2200Open in IMG/M
SRS016043_WUGC_scaffold_20422All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes5040Open in IMG/M
SRS016043_WUGC_scaffold_22594All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes13367Open in IMG/M
SRS016043_WUGC_scaffold_26921All Organisms → cellular organisms → Bacteria8874Open in IMG/M
SRS016043_WUGC_scaffold_44369All Organisms → cellular organisms → Bacteria1025Open in IMG/M
SRS016043_WUGC_scaffold_54900All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium658Open in IMG/M
SRS016043_WUGC_scaffold_56134All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes5338Open in IMG/M
SRS016043_WUGC_scaffold_56263All Organisms → cellular organisms → Bacteria6553Open in IMG/M
SRS016043_WUGC_scaffold_5627All Organisms → Viruses55149Open in IMG/M
SRS016043_WUGC_scaffold_56706All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga gingivalis643Open in IMG/M
SRS016043_WUGC_scaffold_57020All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2868Open in IMG/M
SRS016043_WUGC_scaffold_57531All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1564Open in IMG/M
SRS016043_WUGC_scaffold_65155All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica2397Open in IMG/M
SRS016043_WUGC_scaffold_65769All Organisms → cellular organisms → Bacteria1963Open in IMG/M
SRS016043_WUGC_scaffold_9044All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes57074Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2166895C2166895__gene_150299F047127TKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDRDIREILEKYNSK
C2180754C2180754__gene_154158F049707YILIWEYGNDIRRVEFSERWAEYDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKTS
C2192348C2192348__gene_157295F027205RTHVASRLIVSADDILKAVKESEEFEKKALTEARKRDRAEGKEPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIRK
C2232148C2232148__gene_168119F051212MKKFFFIFVLYWLHSCNGTEKTMTTSPDTQKLSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDKKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQIIDIKFSQLYNHLNLEK
C2235104C2235104__gene_168895F058221MGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNASFLANKFLLPSLEADSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIIQIKKRLDNFQQRETAKSLSKLI
C2247967C2247967__gene_171972F051214MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPNIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWI
SRS016043_WUGC_scaffold_18515SRS016043_WUGC_scaffold_18515__gene_24530F043991MGKKKPSAVDGFDLNGNVIEEANEFDGVLIEEWVNQRSPIKPSWVGRYSDQMHFDLKDGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA
SRS016043_WUGC_scaffold_20422SRS016043_WUGC_scaffold_20422__gene_27388F043991MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNIKPTWVGKYSHQLHFDLADDTEVSFYKGLGIVYADINFPNGIRTILFKCRQKKNLTRFISRVLELAQCDSSNIHPDFRA
SRS016043_WUGC_scaffold_20422SRS016043_WUGC_scaffold_20422__gene_27390F027205VASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIRK
SRS016043_WUGC_scaffold_22594SRS016043_WUGC_scaffold_22594__gene_30581F095632MRPLKKGTTMSFKETAGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGQQYAENFAETIDSIKTPSNN
SRS016043_WUGC_scaffold_26921SRS016043_WUGC_scaffold_26921__gene_37184F051211MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLRVYRPHSLHERILSQLRSKLFRGNPKEFYIAIDKWLADTRSHQSP
SRS016043_WUGC_scaffold_44369SRS016043_WUGC_scaffold_44369__gene_64554F061925LTKEKKKTGKSKQTNIRNNPMGWEYSINLDSEESVSSVVKDLKNCELFSSSTTDYIDWKKPKSIDSIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHNHYLTDCDTDEEVTLEHIFRSVI
SRS016043_WUGC_scaffold_54900SRS016043_WUGC_scaffold_54900__gene_81731F061926RYQIMMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECNDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
SRS016043_WUGC_scaffold_56134SRS016043_WUGC_scaffold_56134__gene_83726F049707VVSEYRSPHNDGHDPYILIWEYGTEVQQAEFSERWAEYEPDTGWTVWYFRLDDGRVMTFRALEWEQKDDVNHLTTIYFTPKKEQ
SRS016043_WUGC_scaffold_56263SRS016043_WUGC_scaffold_56263__gene_83940F080165MKSIKILLLLLSLTACNNKTKTISTLDLEKVVINYKDLPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHAPYIRNKKTKQEYFIYEDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
SRS016043_WUGC_scaffold_5627SRS016043_WUGC_scaffold_5627__gene_6756F105377VRDFNELPLLTPEEAFERAWEEGGSAHPVFDRGYRVRGLNAWKAIETLLCQNDVPDITVASFGLKRFEEILDAIAMLHERGWHLWQTSANVYVDGEKRPVQAIRAHYRGY
SRS016043_WUGC_scaffold_56706SRS016043_WUGC_scaffold_56706__gene_84686F054111MNKSLESITHEVFLKLMEHLKNLQEFTFLEYTMAPEADIFYFNFMEKTVKIKWDLDYGLFLETESLSIVDRDLFLNILDKEFLFLI
SRS016043_WUGC_scaffold_57020SRS016043_WUGC_scaffold_57020__gene_85235F095632MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSMKTPQTN
SRS016043_WUGC_scaffold_57531SRS016043_WUGC_scaffold_57531__gene_86122F059076MTNKILLLGLLLGGISTNAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNVDSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMNILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE
SRS016043_WUGC_scaffold_65155SRS016043_WUGC_scaffold_65155__gene_100417F092231MIIFPPQEFITWTNKLMQFPWPIQVGDFAPYAEKLGWAPTSLPDEFSVCAGNNGGRVILGDDRSGNVRDLFLSMARNETEDAEGAAELNDHFVSCVAAGREAWGEPFLLEAGDGPGVTWRFPGDMFAQVTSGSRAVLFNFFTPEGRRQFL
SRS016043_WUGC_scaffold_65769SRS016043_WUGC_scaffold_65769__gene_101608F081456FSRARKEHTMFKEPPIYYILISIIFLIVFGAISMATWMVWLTSIAFFAKLVITAIGFLLAAMTVILYTISAE
SRS016043_WUGC_scaffold_9044SRS016043_WUGC_scaffold_9044__gene_11163F081510MKLPKLPNMQTIKSTAKSAMVTTKILGKKYAPFVLLGVGLVGYGYSVYAGVKSGKKLEATKAKYEAKDAAGEEYTRMEVVKDVAKDVAIPVAVATASTAAIVLGFAIQTNRLKAVSSALAIVTEEHARYRLRAKEVLDEATFKKIDAPLETKTVELDGQEVEVESIVPNEGDFYGQWFKYSTNYVSDDPDYNESYIKEAEKYLVDRMMRKGVLTFGEVLDKLGFDVPRAALPFGWTDTDDFYIEWDAHEVFDDVKQEYDLQFYVRWKTPRNLYATTSFKDFVPKKTRKELN
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