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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 7000000288 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052811 | Ga0031084 |
| Sample Name | Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159510762 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 170625023 |
| Sequencing Scaffolds | 24 |
| Novel Protein Genes | 27 |
| Associated Families | 24 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella → Riemerella anatipestifer | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 3 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 3 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 2 |
| Not Available | 3 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp. | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018385 | Metagenome | 235 | Y |
| F022002 | Metagenome | 216 | Y |
| F043235 | Metagenome | 156 | N |
| F043991 | Metagenome | 155 | N |
| F045567 | Metagenome | 152 | N |
| F046431 | Metagenome | 151 | Y |
| F046432 | Metagenome | 151 | Y |
| F049707 | Metagenome | 146 | N |
| F051213 | Metagenome | 144 | N |
| F053092 | Metagenome | 141 | N |
| F055792 | Metagenome | 138 | N |
| F061925 | Metagenome | 131 | N |
| F064819 | Metagenome | 128 | N |
| F066860 | Metagenome | 126 | N |
| F070224 | Metagenome | 123 | N |
| F077403 | Metagenome | 117 | N |
| F084362 | Metagenome | 112 | N |
| F089055 | Metagenome | 109 | Y |
| F092230 | Metagenome | 107 | N |
| F095630 | Metagenome | 105 | N |
| F095632 | Metagenome | 105 | N |
| F097526 | Metagenome | 104 | Y |
| F098763 | Metagenome | 103 | N |
| F101359 | Metagenome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C3464827 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 640 | Open in IMG/M |
| C3482859 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 703 | Open in IMG/M |
| C3530382 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae | 998 | Open in IMG/M |
| C3554081 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella → Riemerella anatipestifer | 1347 | Open in IMG/M |
| C3559907 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 1495 | Open in IMG/M |
| C3564588 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 1648 | Open in IMG/M |
| C3575158 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 2265 | Open in IMG/M |
| C3575922 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 2337 | Open in IMG/M |
| C3587268 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 5757 | Open in IMG/M |
| SRS024087_LANL_scaffold_15978 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 9128 | Open in IMG/M |
| SRS024087_LANL_scaffold_22413 | Not Available | 1189 | Open in IMG/M |
| SRS024087_LANL_scaffold_23914 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 20874 | Open in IMG/M |
| SRS024087_LANL_scaffold_26167 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 1433 | Open in IMG/M |
| SRS024087_LANL_scaffold_49359 | All Organisms → cellular organisms → Bacteria | 245738 | Open in IMG/M |
| SRS024087_LANL_scaffold_58488 | All Organisms → cellular organisms → Bacteria | 43898 | Open in IMG/M |
| SRS024087_LANL_scaffold_60036 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 7993 | Open in IMG/M |
| SRS024087_LANL_scaffold_61433 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 5224 | Open in IMG/M |
| SRS024087_LANL_scaffold_63876 | All Organisms → cellular organisms → Bacteria | 2711 | Open in IMG/M |
| SRS024087_LANL_scaffold_65648 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 3956 | Open in IMG/M |
| SRS024087_LANL_scaffold_72976 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas | 1436 | Open in IMG/M |
| SRS024087_LANL_scaffold_73465 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp. | 2477 | Open in IMG/M |
| SRS024087_LANL_scaffold_74222 | Not Available | 1745 | Open in IMG/M |
| SRS024087_LANL_scaffold_75327 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 12524 | Open in IMG/M |
| SRS024087_LANL_scaffold_75652 | Not Available | 25457 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C3464827 | C3464827__gene_235348 | F092230 | MVDKLKTHLLKAFLPLFIVCIIFVTFFRQIDCGSEGGYAFQISEWGAKLKNIYGTDFINKEIIVRDNTVQVDGIRCLYAVNQNEDGLSIYLLLSGGKYLTHNYVGSSFVKFSHSSEYSNMAYGEGSVEVSDSTSTGEVQNTEEKETLNKVDEAINNMRHLFASAIMVNLRVVELYKILTGCMILIAIVVIAGYYSYLKPETVYELYCKL |
| C3482859 | C3482859__gene_243710 | F101359 | MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGTRVQNWSTNFTSYTGQGITDSYKETVK |
| C3530382 | C3530382__gene_267061 | F045567 | MVTEDVVHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKE |
| C3554081 | C3554081__gene_280085 | F064819 | MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRNLKDLCEYKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDKNYMNSINFSFQTDLNGIATFSKEISQEIEKCK |
| C3559907 | C3559907__gene_283523 | F089055 | CVIKTPEIEAREKLAAIFSDAERCDNSKVNPELGKTAIDIENTSRMNSADDGAVYLCNQALGGYEKSLDYINNSPLKTVREIGDLLQSFRKGKAEESCR |
| C3564588 | C3564588__gene_286298 | F061925 | MSWEYSFNLDSEESVSLVVMDLKNCELFSSSTTDYIDWKNPESMDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHLTDCDTDEEVTLEHIFRSVI |
| C3575158 | C3575158__gene_292741 | F066860 | MTTKKQKLQKQQTIDTWIVIALWASAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDHLTTIVRASFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI |
| C3575922 | C3575922__gene_293226 | F043235 | VDEFGTQLTDTLLDRPDRSKRELHQWAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCSGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRCMASNVLLPGSAH |
| C3587268 | C3587268__gene_300904 | F070224 | MKRLLFLLLTLLHCTVWSQVHNAPDSIYVASGAVYIPPISGEPIYLFASPLKSGHTPGHKLRTRDWVKVDYSDRNNIIVRKVGGSLIIENLFIYYAAGFPGMKEYELYHKGTGEEITKEVFDSIKFSRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLLVVEHDKKAGRYYKYRIALVIYMDYNHPEACIIH |
| C3587268 | C3587268__gene_300905 | F070224 | MKRLLFLLLTLLHCTAWSQVYNAPDSLYVVISGVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDQNNLIVRKVGDPLVIENFFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPMALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAYTVH |
| SRS024087_LANL_scaffold_15978 | SRS024087_LANL_scaffold_15978__gene_20859 | F051213 | MNLYKILGALILALSFVFTSCDWVANEPTIEGGRYKTFDSSAQRKSFRVVNASGKRYNHKVDWDIIGITQLDSDTFFTKKVDTLSNGNLKISYDWVSFTVKENKSVIEVEVQKNETGQDRSVLFATSNSRTQTHRPNMIITQRAK |
| SRS024087_LANL_scaffold_22413 | SRS024087_LANL_scaffold_22413__gene_28841 | F022002 | ALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIIQEVGIHAGSNDVSYIVSGLNYARRPTQTVDMFFYKGHLRRIYFSFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEI |
| SRS024087_LANL_scaffold_23914 | SRS024087_LANL_scaffold_23914__gene_30758 | F043991 | MGKNKPSAVDGFDLNGNVIEEANEFDGVLIEEWVNQRSPLKPSWVGRYSDQMHFDLKDGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA |
| SRS024087_LANL_scaffold_23914 | SRS024087_LANL_scaffold_23914__gene_30761 | F018385 | MAEYVNRWDPYSELSIEKDRDPVLDDHLIYGTNVEHYTLTVYSPEGRVSKYWNARILKDDLGRCRIACPREGKILCFSWFDWDAHMFTHDGMNELVFAPKLNSRSPQSLWSKKEVK |
| SRS024087_LANL_scaffold_26167 | SRS024087_LANL_scaffold_26167__gene_33719 | F053092 | CLTHALLVLGALILEPAEMEDTMDDHAVQLFGVLGAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK |
| SRS024087_LANL_scaffold_49359 | SRS024087_LANL_scaffold_49359__gene_66298 | F046432 | MQMSESRLGEVISKFQMPQDRYLIEQEGSFGRGEFFRVIKNQTTHQKYLLMNTYSHHGVESELEYYREEGFSNLEAIPRRIETLEIPSDAEDEISKYLFGFYSIFEIKS |
| SRS024087_LANL_scaffold_58488 | SRS024087_LANL_scaffold_58488__gene_79573 | F095632 | MTMSFKETTGYKVASLVASTSASITAGAVVGALCPPAGVVLTAVYGIGSSVLGTYVGDKAGRQYAETIAETIDSMKTPSTN |
| SRS024087_LANL_scaffold_58488 | SRS024087_LANL_scaffold_58488__gene_79593 | F049707 | VVSEYKSPHNDGHDPYILIWEYGNDAQRAEFSERWATFGADGRTIWHFRLVDGGVMTFSSREWEQKDDVNHLTTIHFQPTIQNNEKELT |
| SRS024087_LANL_scaffold_60036 | SRS024087_LANL_scaffold_60036__gene_81878 | F077403 | MSAIYAEERISVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSEQAYYLQGYLYYLLTPQLDHDWYQVTYLLEHMNHSVGTEMTGTEGVLKPFVHHLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDRYEGYQLY |
| SRS024087_LANL_scaffold_61433 | SRS024087_LANL_scaffold_61433__gene_84131 | F095630 | MRYSSLYKISKDNGLLAHVYEHLLAQYILKYLQDRGFFISSDIILTAKTYGDTCYMDAELHNPAAPNIYDEALRAFDKYAIPEKAVRRAVSECGIEMNRAVLELNRDELMPNLRVLQSSEWCQQSEMTYRKSYDKSSVDTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALTAIVVQTVALNFLVAVRENHIVYDRGDQWSEASLSVGYRIFLGLAKEDKQITSQLKHEFAAYIQYLLKSPFCSNLQKALIRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDVRIKQMITVIQLDVYDI |
| SRS024087_LANL_scaffold_63876 | SRS024087_LANL_scaffold_63876__gene_88122 | F055792 | MEIASQTLDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLPIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLESRIIGKAMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL |
| SRS024087_LANL_scaffold_65648 | SRS024087_LANL_scaffold_65648__gene_91299 | F046431 | MKRISKIGITIILILSIIISYGSVIISMAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSTFETIGLTDFSNNATDEEVKVLNVYPHSKNIGKLWEGSSAFQTLPMVNVTYLDGHTETIEKSALLKVWMEGRNSK |
| SRS024087_LANL_scaffold_72976 | SRS024087_LANL_scaffold_72976__gene_106927 | F098763 | MDRRASLRVLSTALYLATKLFEAVVWTMISYDPSDEVEGKGGMNAIPTAVDE |
| SRS024087_LANL_scaffold_73465 | SRS024087_LANL_scaffold_73465__gene_108453 | F097526 | MTTNDTKAITIYTQDDYRRLCERLDDNTVTALLHAHIRAFAADGSQALLKRLTEGLRIAGEMEKAGRNGHPDPAEQARRERWDCQFTVLQQQARMAHCEIVNADNAAVSRLTRQCEKNGSCDTAIPLPRDDYGFAAALRDFPLNEHQTALLWRMALLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLA |
| SRS024087_LANL_scaffold_74222 | SRS024087_LANL_scaffold_74222__gene_111036 | F022002 | EARAIIQRQGGKIILEVGVQAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELERARSAEKESEI |
| SRS024087_LANL_scaffold_75327 | SRS024087_LANL_scaffold_75327__gene_115894 | F077403 | MDTIMPLLRRLVLIILLLSAVRAIHAEERVSVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYEERVRRHITHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYTLPDRYEGYQLY |
| SRS024087_LANL_scaffold_75652 | SRS024087_LANL_scaffold_75652__gene_118415 | F084362 | MNCTFTVRWSDEKNKPHAKTYATESDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKPSETDAEQKGFWWEK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |