NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000292

7000000292: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159369152



Overview

Basic Information
IMG/M Taxon OID7000000292 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052815 | Ga0031310
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 159369152
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size78148901
Sequencing Scaffolds16
Novel Protein Genes17
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
Not Available2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042387Metagenome158N
F043991Metagenome155N
F046433Metagenome151N
F047127Metagenome150N
F051211Metagenome144N
F054109Metagenome140N
F067846Metagenome125Y
F068942Metagenome124N
F071328Metagenome122N
F071329Metagenome122N
F072446Metagenome121N
F077404Metagenome117N
F080164Metagenome115N
F081510Metagenome114N
F085820Metagenome111N
F094006Metagenome106Y
F103432Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C1987324All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria502Open in IMG/M
C1992680All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes525Open in IMG/M
C2015476All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes665Open in IMG/M
C2033179All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium858Open in IMG/M
C2060476Not Available1957Open in IMG/M
SRS023958_Baylor_scaffold_10270All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales29750Open in IMG/M
SRS023958_Baylor_scaffold_12877All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales21154Open in IMG/M
SRS023958_Baylor_scaffold_14241All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae18599Open in IMG/M
SRS023958_Baylor_scaffold_16780All Organisms → cellular organisms → Bacteria2196Open in IMG/M
SRS023958_Baylor_scaffold_16805All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales13337Open in IMG/M
SRS023958_Baylor_scaffold_16988All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1173Open in IMG/M
SRS023958_Baylor_scaffold_2444All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales13193Open in IMG/M
SRS023958_Baylor_scaffold_24934All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes56547Open in IMG/M
SRS023958_Baylor_scaffold_41386All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron1806Open in IMG/M
SRS023958_Baylor_scaffold_42896All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli10160Open in IMG/M
SRS023958_Baylor_scaffold_6960Not Available4943Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C1987324C1987324__gene_98310F051211SDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRYLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
C1992680C1992680__gene_100145F043991SKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNIKPSWVGKYSHQLHFDLADDTEVSFYKGLNIVYADINFSNGIRTILFKCRQKKNLTRFISRVLEIAQGDLSNVHPDFRA
C2015476C2015476__gene_107611F071329VAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED
C2033179C2033179__gene_113706F042387MAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPALIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMV
C2060476C2060476__gene_124108F047127MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIKEILEKYNSK
SRS023958_Baylor_scaffold_10270SRS023958_Baylor_scaffold_10270__gene_13161F068942MIRKILSLPTLALCFTLGSALFAGCNEEEYIKDTKVRWSNVKNPEYGDPINITLKAEGETFTTMGDYPWISFRSYASTLDTFTSHSFSEADKDTAYYKDIVIYLTRNKRERTTTLKLVAPPNRTQQPKQFDFSIGVTPLGTYIFKVRQPALPAKAQ
SRS023958_Baylor_scaffold_12877SRS023958_Baylor_scaffold_12877__gene_16393F085820MKSSFLTLFAMLFLAATFFSCETDEPAPRPTWGEIVNPIEAFMYPRDIKVYADDDDGRRWLILVLPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECNFRRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLSFYTYKQIFDCQFKCGDRSIFAKPLGEVVEADYQWLPGRDGFGLITPPNPDHLKQRIVLRLADGTEIEKELSEKGKK
SRS023958_Baylor_scaffold_14241SRS023958_Baylor_scaffold_14241__gene_18328F072446MHEFDAQAQKNKFNPPTHPQMKKLVFLLFGLCLYGFTACDSDHEPTKPVRPFHGDTLAQIAWNFPYIVEHHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKEFETLARQLHALTLPTVGTSPVLCGVKSIKAVGVAENGRTYDLRREMKLRIRDYKSRRKYDSGRIVTLECEDTESMTARYVVVLGEIRKTELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTMWPLPEKEIER
SRS023958_Baylor_scaffold_16780SRS023958_Baylor_scaffold_16780__gene_21715F046433PPKLLSQAQDASRDNTVTYVVDDGYMGTMTSDPRFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRSELVFLGMSELHFAATALAKRLRHLLEVDNKPVYVDVGNSLGQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIGESSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSSYINNGIVADSLWGEVVYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG
SRS023958_Baylor_scaffold_16805SRS023958_Baylor_scaffold_16805__gene_21755F071328MKWEFILEGEYIVEFVKLCKHLVLERTIDPNKHQAAAIYLRYSSQLLLKKKRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINIYFSKHHQSFIYIIQRIEFSNEEYRSFILKVLPVKKSEW
SRS023958_Baylor_scaffold_16988SRS023958_Baylor_scaffold_16988__gene_22021F094006AKAPLTTLSRARVAAMRGALEPADPTGALYESAVCVEAHIGELQAGGIACRSLFAFGGSNVLAVAELGAEAPHAIDMYDIAVCEPLSELFAEELEYAFNLGA
SRS023958_Baylor_scaffold_2444SRS023958_Baylor_scaffold_2444__gene_3050F080164MVGLTLCAAPQVTLRERASAFPLITEKAVSEIYAPYAWRLPVVPLSLDNREIRNFAKYPALPSLSEGKLTVRVLVVGDTVAVHQDLMDDFAKRCRATLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPLHYKEQTGQLVLCEHYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS
SRS023958_Baylor_scaffold_2444SRS023958_Baylor_scaffold_2444__gene_3051F103432MKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTTAGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSCPLLLGKIQNVNYRTREGVFHEHYEAASVDTFSVKDDWLLKTKAEPSLYVPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLY
SRS023958_Baylor_scaffold_24934SRS023958_Baylor_scaffold_24934__gene_33017F081510MHIRSSQVSPLWRTLFWQKHYKGVIKMKFDLNAVKATAKTTWVTTKILGKKYAPVILLGAGLIGYGYSVYEGIKSGKKLEATKAKYEEMEAAGEEFSRVDVVKDIAKDVAIPVAVATASTASIILGFAIQTNRLKAVSAALAMVTEEHARYRLRAKTVLDEETFKKIDAPLETKTVNVDGEDIEVESIVPNEGDFYGMWFKKSHKYASDSPEYNEGVIKEADNVLTEKMMRKGMLTFAEVLDILGFEVPKAALPFGWTDTDGFYIEWDAHEVWNDNKQEYEVQFYVRWKTPRNLYATTNFHDFVPKKTRKELN
SRS023958_Baylor_scaffold_41386SRS023958_Baylor_scaffold_41386__gene_58680F077404MNILKTAFAFFFALCFMMGANSYAQKTESINAEASKNELKRNAVYLPPALEEYADTTLLHQRFIVENKGNYLYIPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRHIKSDFSYGHPYQGFTDYDRVELSNFVQSYGRQAALETAKAWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLYLYFLMIDSVALNFDTKVLPYIKGVFRFNRIQ
SRS023958_Baylor_scaffold_42896SRS023958_Baylor_scaffold_42896__gene_61770F054109MAGRPKSKKGMKVHTAFKIYPDDKARAQAMADKLDMSLSAYINKAVLEKVARDEKSET
SRS023958_Baylor_scaffold_6960SRS023958_Baylor_scaffold_6960__gene_8849F067846MSIIADWERQEFNKWDRQCSKEDDYNRAIEMEIEAIKENISNCDDDVICSFREKMLDYCEVINAFDDDTFNDDEFIKAIALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND
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