Sample 7000000295

Basic Information
IMG/M Taxon OID	7000000295 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052818 \| Ga0031284
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765034022
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000295 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0052818 | Ga0031284

Sample Name

Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765034022

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	108911420
Sequencing Scaffolds	19
Novel Protein Genes	25
Associated Families	22

Dataset Contents

Total Genome Size

108911420

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
Not Available	3
All Organisms → Viruses → Predicted Viral	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium → Phascolarctobacterium faecium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

Not Available

All Organisms → Viruses → Predicted Viral

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium → Phascolarctobacterium faecium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F043991	Metagenome	155	N
F046432	Metagenome	151	Y
F051214	Metagenome	144	N
F054109	Metagenome	140	N
F067846	Metagenome	125	Y
F071328	Metagenome	122	N
F073671	Metagenome	120	N
F074985	Metagenome	119	N
F077404	Metagenome	117	N
F078842	Metagenome	116	N
F080164	Metagenome	115	N
F081455	Metagenome	114	N
F085820	Metagenome	111	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F095629	Metagenome	105	N
F099452	Metagenome	103	N
F103432	Metagenome	101	N
F103435	Metagenome	101	N
F105380	Metagenome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
C2924777	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	960	Open in IMG/M
C2928877	Not Available	1037	Open in IMG/M
C2944377	Not Available	1589	Open in IMG/M
C2957145	All Organisms → Viruses → Predicted Viral	4027	Open in IMG/M
SRS019219_WUGC_scaffold_14163	All Organisms → Viruses → Predicted Viral	1744	Open in IMG/M
SRS019219_WUGC_scaffold_1557	All Organisms → Viruses → Predicted Viral	4189	Open in IMG/M
SRS019219_WUGC_scaffold_18632	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	8644	Open in IMG/M
SRS019219_WUGC_scaffold_24880	All Organisms → cellular organisms → Bacteria	6323	Open in IMG/M
SRS019219_WUGC_scaffold_3581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium → Phascolarctobacterium faecium	1418	Open in IMG/M
SRS019219_WUGC_scaffold_37371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	29760	Open in IMG/M
SRS019219_WUGC_scaffold_4367	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1024	Open in IMG/M
SRS019219_WUGC_scaffold_45821	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	6076	Open in IMG/M
SRS019219_WUGC_scaffold_53999	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	160392	Open in IMG/M
SRS019219_WUGC_scaffold_55449	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	5068	Open in IMG/M
SRS019219_WUGC_scaffold_58435	All Organisms → Viruses → Predicted Viral	2841	Open in IMG/M
SRS019219_WUGC_scaffold_66328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	18292	Open in IMG/M
SRS019219_WUGC_scaffold_68110	Not Available	1684	Open in IMG/M
SRS019219_WUGC_scaffold_68989	All Organisms → cellular organisms → Bacteria	22298	Open in IMG/M
SRS019219_WUGC_scaffold_74221	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	21844	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2874230	C2874230__gene_163301	F046432	MTENELSGIISKYQMTEGRYPLEEEGSFGESEFFWVIKNQSTNKKYLLVNTYSHHGVESELECYREGGFDNLEAIPRKIETL
C2924777	C2924777__gene_178419	F074985	PRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFIEIWSEQTFGHLHPIIVNHDYKFWHVMGIKLEGDDDIKWCIYLKRQDSDFMTKIKVNHDQKFVLNPLSGAFILDDPTQEIKDLEEIKQALRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSKTGEQKYLLDHIKAMHID
C2928877	C2928877__gene_179626	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVTMDSTTMFRRHNLPSVSAYSFQVVAVGDTIYRQKESDAQFNADLDALFHESIGMAPRLFGVKELSVVGIDRKGNPRDLGNYSCPLLQGKRKNVNYRTREGIFHEHYEAERIDTFSVKSNWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVA
C2944377	C2944377__gene_184205	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAICLRYSSQLLLKKRRAIRRLGIEKEYVSAILRLYGIHYREYGDNEHRVFFLDTGINIYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW
C2957145	C2957145__gene_188286	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSNRKTISRLWCEEVK
C2957145	C2957145__gene_188288	F051214	MPGKIVAHDTHLRIDTEFIELRDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI
C2957145	C2957145__gene_188289	F043991	MSKKNPSVIDYFSLNGDVVEEANEFDGISLEDWIDKRSSIKPSWVGQYSQQMHFDLPDDTEVSFYKTSNVIYADIIFADGVRTILFKCRQKKNLTRFISRVLELANLGSKHVHPDFRA
SRS019219_WUGC_scaffold_14163	SRS019219_WUGC_scaffold_14163__gene_20196	F089057	MINVIPLIAKKYNRKGDTSGSLKSLISDLNCVTDNDDVLLFLSSIPRETKYSLDDAFDIIVSNDEYSNIFRATLVFLNIDLDYHRLLLNAIKSESYTIICMINKAIPTPDLFLAKNNYECLTIALDKSYAIFDKVLGMVVGQIKHTASSKEGRALGIFMTICILNKDIDKLASLCTGYLATCRSEYMVKDLMNKSAMDAFQYMSEEDIHAVVDDINSRTVLSRYLNKM
SRS019219_WUGC_scaffold_1557	SRS019219_WUGC_scaffold_1557__gene_1853	F095629	MEVIKMRELIICACLLGCFGVANADAPVEQPKEVKVVHNDDNVALHKKIYKLEQRVERLEKLLAEKEGK
SRS019219_WUGC_scaffold_18632	SRS019219_WUGC_scaffold_18632__gene_26403	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSMNIFNLYKAIVNLDDVSLLTDLRKTPWYKDWFTSDKRNADLINLSKFNFRSLERFEKESYLKDVEHYDFEGVIEVDSYSLYDTLAEDNSVELFKLAAENILINHGFFNNTDYNLYDIPDKYMEDIEVSLYMCLLNSGNMDFMDKKTFKSTELFYIVKNNICGTIFFTLFDRMNEDTRTRAR
SRS019219_WUGC_scaffold_24880	SRS019219_WUGC_scaffold_24880__gene_35520	F095629	MMFKERMMRELIICVCLLGCFSVANANNIEQSKEVKIVHNDDSVILHKKIYQLEKRIERLEELLKKEDK
SRS019219_WUGC_scaffold_31686	SRS019219_WUGC_scaffold_31686__gene_45841	F103435	MKFVFTTEPIYQYYRAYLYPSDKDKLDKDLMVEYGDYKDYWDLKNQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYSYLIDNPEFENIFSEILFNQSEEEFYEFYKAIDRFYNGSEIFIIVSNDEYSDMVTQMMCNVIRRMYGIHPQVIYDMDDVLNIRDDIDFSPQGAQLAYLQRSAYYKLEAKRSLEPLQIWYPFDMNTYTNALE
SRS019219_WUGC_scaffold_3581	SRS019219_WUGC_scaffold_3581__gene_5034	F089057	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIISSNDKYSEVLSNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILGLFMTICIVNKDIDKLASLCTGYLAITKDEVLVKNLMNESATNAFQYMSEEDIHTVVDDINSRSVLARYLSRM
SRS019219_WUGC_scaffold_37371	SRS019219_WUGC_scaffold_37371__gene_54436	F054109	MKVHTAFKIYPDDKARAQAMADKLDMSLSAYINKAVLEKVARDEKSEA
SRS019219_WUGC_scaffold_4367	SRS019219_WUGC_scaffold_4367__gene_6187	F027205	VASRLIVSADDILKAVKESEEFEKKALTEARKRDRAEGKEPRETLYPNPDLKPGRDIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRRAK
SRS019219_WUGC_scaffold_45821	SRS019219_WUGC_scaffold_45821__gene_67240	F077404	MNMLKTIFAFFFALCFMMGANSYAQKTDSINAEASERVLNRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPSILFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIIFTNYLVVLGDTYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTDYDRVELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVALNFDTEVLPYIKGVFRFNRFR
SRS019219_WUGC_scaffold_53999	SRS019219_WUGC_scaffold_53999__gene_80393	F105380	MSILQLDASQYVKQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSREESYFPNGKRLKLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVPSHNIKKCAVFLGEITKEQENVNTYEEFMEWTKNTKWFK
SRS019219_WUGC_scaffold_55449	SRS019219_WUGC_scaffold_55449__gene_82780	F092229	MNKEYRFNHIPEVVLRNIRFIRDNNIDIGTGDDVLECMMDINPIVRTKIYDDYEFAKDVAERRFGSTIEGLDLRTVLQKCINRPYNSILNNIFFRYFNSELIDDLFKLGQSPKVLDLAIEYECEYYTVNTAKTNIRRYNTDAYFNKFAADSNIISSHRSLHDPQVNAVESAKFTHELLMASRSENFNPEMVREIFVKYGLKPNSSRNLYNRINDNLNLFYYIEDYLDEYRVKGRFIYGTKEYKILKELRGLPLMVVLTQLTRKNDSGYILNEYLELVKG
SRS019219_WUGC_scaffold_58435	SRS019219_WUGC_scaffold_58435__gene_87573	F081455	VLFKAKEKHIMEPLGKKSTKLMKEVLDNIILKSKKDFPPVEEIGAETVDIIDSAEEAIQQPLQNTDSSIAVNFSQMVNKPKEEVKTEVNSVPPEGETKLNVVFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSTFNPECNPNKRLRYELIRHQGREKDLVIRLSTVVNGTTKYYADIYPDLNKIDLDHHLISSAKK
SRS019219_WUGC_scaffold_66328	SRS019219_WUGC_scaffold_66328__gene_101232	F067846	MSIIADWERQEFNKWDRQCSKEDDYNRVVEMEIEAIKEDIANNDSDALCAFSEKMFEDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEEDYRKGYILND
SRS019219_WUGC_scaffold_66328	SRS019219_WUGC_scaffold_66328__gene_101238	F073671	MNKETEHELAELHEKERGLEKALELVREKIRELVNYTDKNKGQK
SRS019219_WUGC_scaffold_68110	SRS019219_WUGC_scaffold_68110__gene_104633	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDDTEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTAAGLRVSEPRRIVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSFQVVAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSYPLLRGVRIYMAFRSREGVFHEHYEAARVDTFSVKDDWLLKTKAEPSLYVPSFRLLVWDQPADDYTKLRFTLTLVDGRSLVA
SRS019219_WUGC_scaffold_68110	SRS019219_WUGC_scaffold_68110__gene_104634	F080164	MRPTSFVLSLLLGTVGLALCAAPQVTLRERASAFPLITEKDESEIDAPYAWRLPVVPLRLDNREIFNFAKYPTLPSLFGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVRKDGSRQAVDEQVTLHLPGFEKAEKPFLYKGQAGRLVLCEYYGSHRGDLLLDAANARPEIFGELNPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYGEQTSILDHPARS
SRS019219_WUGC_scaffold_68989	SRS019219_WUGC_scaffold_68989__gene_106293	F078842	GDTCFMDAELYSPEVKKTYDEALRKFDKLIIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAYDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPIDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEVSISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIRQMINSIELDVYEVNL
SRS019219_WUGC_scaffold_74221	SRS019219_WUGC_scaffold_74221__gene_119909	F085820	MYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFRRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLSFYTYKQIFDCQFKCGDRSIFAKPLGEVVEADYQWLPGRDGFGLVAPLNPDGLKQRIVLRLADGTEIEKELSDKRKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000295: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765034022

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences