NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000313

7000000313: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 604812005



Overview

Basic Information
IMG/M Taxon OID7000000313 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052839 | Ga0031092
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 604812005
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size120282478
Sequencing Scaffolds14
Novel Protein Genes14
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4161
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip21

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040149Metagenome162N
F043235Metagenome156N
F045567Metagenome152N
F049707Metagenome146N
F073671Metagenome120N
F080165Metagenome115N
F084342Metagenome112N
F095631Metagenome105N
F095632Metagenome105N
F103434Metagenome101N
F105378Metagenome100N
F105380Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C5395701All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes655Open in IMG/M
C5433321All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium942Open in IMG/M
C5449924All Organisms → cellular organisms → Bacteria1285Open in IMG/M
C5465376All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2568Open in IMG/M
C5470632All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA41610629Open in IMG/M
SRS058053_LANL_scaffold_12455All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes4943Open in IMG/M
SRS058053_LANL_scaffold_45214All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3969Open in IMG/M
SRS058053_LANL_scaffold_45215All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes4517Open in IMG/M
SRS058053_LANL_scaffold_56837All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae1076Open in IMG/M
SRS058053_LANL_scaffold_83087All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1053Open in IMG/M
SRS058053_LANL_scaffold_83394All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales3524Open in IMG/M
SRS058053_LANL_scaffold_84224All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales127325Open in IMG/M
SRS058053_LANL_scaffold_85617All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales5182Open in IMG/M
SRS058053_LANL_scaffold_85963All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip212931Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C5395701C5395701__gene_205901F103434FRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPDSLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR
C5433321C5433321__gene_221853F080165MKNKKFLLAILLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQSLQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFT
C5449924C5449924__gene_229194F045567VHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVNEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
C5465376C5465376__gene_236928F095632MTMSFKDTTGYKVVNFVASTTASITAGAVVSALCPPAGMALTVVYSLGSGVLGSYVGDKAGQQYAENFAETIDSIKTNSNN
C5470632C5470632__gene_241319F095631MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVAVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTITDEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAAADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQSFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTEDNKLDISIIIA
SRS058053_LANL_scaffold_12455SRS058053_LANL_scaffold_12455__gene_10404F095632MSFKETTGYKVVSLVASTSASIPAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSMQTPSTN
SRS058053_LANL_scaffold_45214SRS058053_LANL_scaffold_45214__gene_43691F049707VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTIWYFRLVDGGVMTFSAREWEQKDDVNHLTTIWMRPSLYDIERKEN
SRS058053_LANL_scaffold_45215SRS058053_LANL_scaffold_45215__gene_43702F049707VVSEYKSPHNDGHDPYILIWEYGSEVQKAEFVERWVEYEPDTGWTVWHFRLEDGRVMTFRALEWEQRDDVNHLTTIYFTPKKED
SRS058053_LANL_scaffold_56837SRS058053_LANL_scaffold_56837__gene_58024F073671MNKEQTEHELAELHEKERSLEKALELVREKIRELVNCTDKNKAAR
SRS058053_LANL_scaffold_83087SRS058053_LANL_scaffold_83087__gene_98089F043235VDEFGTQLTDALLDRPDRSKRELHQWAVNGDDIVQLCHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIAPFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGETAGGCHSMAKDQEVPALYCRSHGFKGGRSMASNVLLPGSAH
SRS058053_LANL_scaffold_83394SRS058053_LANL_scaffold_83394__gene_98727F084342LGGYLAIPICRPFFAQAPKETLSQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE
SRS058053_LANL_scaffold_84224SRS058053_LANL_scaffold_84224__gene_100666F105378MNINVYVDNIKKWVQISSDEVLDRNKNLSDLKDKNAAIINLGLYDKFISKEALESGFLPDIFTPENIVTDSNHQFVTDAEKNKWNNKLNKPIANQDHLEENQIGYDELNEKFYIGLNNKNVLIGGASALDNIKVVNGFFSGNSQATVIRNTKQNENGEFVRPIFVDVQCTEYTGGDLGEISVTYTAEAINVYNTGSFTGSFQCMIVYPLGSANR
SRS058053_LANL_scaffold_85617SRS058053_LANL_scaffold_85617__gene_104697F040149VADEGAKEFRWKVLIREQGIPVLFVEVVAWYDGRVSSSEILSSFGIALEREPRLSPVWSHDSEDAIDYFIYDASVPKGHALTAVRE
SRS058053_LANL_scaffold_85963SRS058053_LANL_scaffold_85963__gene_106140F105380MSILELDSSQYVKQGRIFKKFDSALLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGIIDFYSPNGGRLVYNRLCKGRMMDDIGTDDYEAWKRTPVNRASNFVNKFISARGNSDLDFISNPIRSNVANNIKGYAEFLASITKEQENVNTYEEFIEWTKNTNWLK
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