Sample 7000000318

Overview

Basic Information
IMG/M Taxon OID	7000000318 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052845 \| Ga0031221
Sample Name	Human throat microbial communities from NIH, USA - visit 1, subject 763961826
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	60040741
Sequencing Scaffolds	5
Novel Protein Genes	5
Associated Families	3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → unclassified Alloprevotella → Alloprevotella sp. OH1205_COT-284	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F068942	Metagenome	124	N
F072446	Metagenome	121	N
F103436	Metagenome	101	Y

Family

Category

Number of Sequences

3D Structure?

F068942

Metagenome

124

F072446

Metagenome

121

F103436

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
C1323405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1054	Open in IMG/M
C1326565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1179	Open in IMG/M
C1337297	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella	2336	Open in IMG/M
SRS014689_WUGC_scaffold_13091	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.	1574	Open in IMG/M
SRS014689_WUGC_scaffold_16398	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → unclassified Alloprevotella → Alloprevotella sp. OH1205_COT-284	3996	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

C1323405

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus

1054

Open in IMG/M

C1326565

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus

1179

Open in IMG/M

C1337297

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella

2336

Open in IMG/M

SRS014689_WUGC_scaffold_13091

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.

1574

Open in IMG/M

SRS014689_WUGC_scaffold_16398

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → unclassified Alloprevotella → Alloprevotella sp. OH1205_COT-284

3996

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
C1323405	C1323405__gene_90816	F103436	SDAEILNSLKDWVSRCDVKYVKSDALKKIDSAFALWGGRQYVAAVDLLDENEVFLKKSDWPYYALGIQILKVRKHEFFNE
C1326565	C1326565__gene_92472	F103436	MIITSKDGWCDKSDAEILNSLRDWVLKCDLKYSKREALKKIDSAFALWGNAEYVAAVHLLDENEVYFSKEDWPYYALGIEILKARKYTYFY
C1337297	C1337297__gene_98365	F072446	MTTGPKHSTTNLTIFLRIYKLGDTLLENIPPMKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDRTEKEYNDMELGKEAHLVFRATVHGDTINRHKKELKALSLQLNRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLRGEMKLRIRDYSYRLKYPSGIITLDCENTESLTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGEVLSFQHKLPSKSVLQELPNKSVLENYQQYGFIPESTYFTTLWPLPDYKYNEREL
SRS014689_WUGC_scaffold_13091	SRS014689_WUGC_scaffold_13091__gene_13538	F068942	MIRKILSLPTLALCFTLCTALFAGCGENNEGFVTKVRWSNVKNPKYGDDINITLKAEGETFTTVGDHSQIFFGYDASTLDTFTRHRFPKVDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKHFKFSVSVTPPGTYFFNVRQPALPAKAQ
SRS014689_WUGC_scaffold_16398	SRS014689_WUGC_scaffold_16398__gene_17463	F068942	MIRKILSLPTLALCFTLCTALFAGCGENNDGFVTEVHWSNVKNPEYGNAINITLKAEGETFTTVGNHSWISFSGSVSTLDTFTRHRFSEVDKDTAYYKDIIIYMTRNERERTTTLKLVAPPNRTQQPKQFDFSIEVTPPAMYIFKVRQPALPAKAQ

Scaffold ID

Protein ID

Family

Sequence

C1323405

C1323405__gene_90816

F103436

SDAEILNSLKDWVSRCDVKYVKSDALKKIDSAFALWGGRQYVAAVDLLDENEVFLKKSDWPYYALGIQILKVRKHEFFNE

C1326565

C1326565__gene_92472

F103436

MIITSKDGWCDKSDAEILNSLRDWVLKCDLKYSKREALKKIDSAFALWGNAEYVAAVHLLDENEVYFSKEDWPYYALGIEILKARKYTYFY

C1337297

C1337297__gene_98365

F072446

MTTGPKHSTTNLTIFLRIYKLGDTLLENIPPMKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDRTEKEYNDMELGKEAHLVFRATVHGDTINRHKKELKALSLQLNRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLRGEMKLRIRDYSYRLKYPSGIITLDCENTESLTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGEVLSFQHKLPSKSVLQELPNKSVLENYQQYGFIPESTYFTTLWPLPDYKYNEREL

SRS014689_WUGC_scaffold_13091

SRS014689_WUGC_scaffold_13091__gene_13538

F068942

MIRKILSLPTLALCFTLCTALFAGCGENNEGFVTKVRWSNVKNPKYGDDINITLKAEGETFTTVGDHSQIFFGYDASTLDTFTRHRFPKVDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKHFKFSVSVTPPGTYFFNVRQPALPAKAQ

SRS014689_WUGC_scaffold_16398

SRS014689_WUGC_scaffold_16398__gene_17463

F068942

MIRKILSLPTLALCFTLCTALFAGCGENNDGFVTEVHWSNVKNPEYGNAINITLKAEGETFTTVGNHSWISFSGSVSTLDTFTRHRFSEVDKDTAYYKDIIIYMTRNERERTTTLKLVAPPNRTQQPKQFDFSIEVTPPAMYIFKVRQPALPAKAQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000318: Human throat microbial communities from NIH, USA - visit 1, subject 763961826

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences