Sample 7000000358

Overview

Basic Information
IMG/M Taxon OID	7000000358 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052902 \| Ga0031030
Sample Name	Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764447348
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	66138844
Sequencing Scaffolds	4
Novel Protein Genes	4
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F049707	Metagenome	146	N
F063777	Metagenome	129	N
F097526	Metagenome	104	Y
F101359	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

F049707

Metagenome

146

F063777

Metagenome

129

F097526

Metagenome

104

F101359

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
C2108872	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	502	Open in IMG/M
C2175681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	2596	Open in IMG/M
C2177907	All Organisms → cellular organisms → Bacteria	3539	Open in IMG/M
SRS015989_WUGC_scaffold_13220	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1541	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

C2108872

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

502

Open in IMG/M

C2175681

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.

2596

Open in IMG/M

C2177907

All Organisms → cellular organisms → Bacteria

3539

Open in IMG/M

SRS015989_WUGC_scaffold_13220

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales

1541

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
C2108872	C2108872__gene_82959	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWS
C2175681	C2175681__gene_108667	F097526	MQHFSAQPDGTAAITPYTQDDYRRLCERLDDDTVAALLHAHIDAFAADGNRQLLKRLTEAMHIAAEFEQAGRNGHPDSEEQTRRAYWDCHFAALQQHARMAGNQITNADNAAVSRLTRQCEKNGSCDTAIPSPHDDDYGFAAALRDIPLNEKQTALLWRMALLTIAEMMDAVPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQQKSGQLQRDLWHSAAALGSGDAEVREKPQ
C2177907	C2177907__gene_110122	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMRPSLYDIERKAS
SRS015989_WUGC_scaffold_13220	SRS015989_WUGC_scaffold_13220__gene_19022	F063777	MKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFGILFLIGWGIYSGINSIISAVKEDFFGIKDKTNIKTSKNILLENEQFKLKKEDYLPDENSQKYKIFEDFCAKSNEYLDDGYVFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKIIVLADIKDFFWLDFDSETKTINGYNNKEQIEVAISE

Scaffold ID

Protein ID

Family

Sequence

C2108872

C2108872__gene_82959

F101359

MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWS

C2175681

C2175681__gene_108667

F097526

MQHFSAQPDGTAAITPYTQDDYRRLCERLDDDTVAALLHAHIDAFAADGNRQLLKRLTEAMHIAAEFEQAGRNGHPDSEEQTRRAYWDCHFAALQQHARMAGNQITNADNAAVSRLTRQCEKNGSCDTAIPSPHDDDYGFAAALRDIPLNEKQTALLWRMALLTIAEMMDAVPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQQKSGQLQRDLWHSAAALGSGDAEVREKPQ

C2177907

C2177907__gene_110122

F049707

VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMRPSLYDIERKAS

SRS015989_WUGC_scaffold_13220

SRS015989_WUGC_scaffold_13220__gene_19022

F063777

MKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFGILFLIGWGIYSGINSIISAVKEDFFGIKDKTNIKTSKNILLENEQFKLKKEDYLPDENSQKYKIFEDFCAKSNEYLDDGYVFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKIIVLADIKDFFWLDFDSETKTINGYNNKEQIEVAISE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000358: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764447348

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences