NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000369

7000000369: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764811490



Overview

Basic Information
IMG/M Taxon OID7000000369 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052913 | Ga0031109
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 764811490
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size58589505
Sequencing Scaffolds17
Novel Protein Genes19
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
Not Available1
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027205Metagenome195N
F040149Metagenome162N
F043235Metagenome156N
F045567Metagenome152N
F053092Metagenome141N
F055792Metagenome138N
F059076Metagenome134N
F063778Metagenome129Y
F064819Metagenome128N
F074985Metagenome119N
F080165Metagenome115N
F084342Metagenome112N
F092232Metagenome107N
F097525Metagenome104N
F101358Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2066934All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales695Open in IMG/M
C2070152All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium738Open in IMG/M
C2089186All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1316Open in IMG/M
C2089852Not Available1361Open in IMG/M
C2096270All Organisms → Viruses → Predicted Viral2160Open in IMG/M
C2096488All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas2205Open in IMG/M
C2100962All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis5928Open in IMG/M
SRS047100_WUGC_scaffold_13861All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium543Open in IMG/M
SRS047100_WUGC_scaffold_14800All Organisms → Viruses → Predicted Viral2876Open in IMG/M
SRS047100_WUGC_scaffold_24347All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces3892Open in IMG/M
SRS047100_WUGC_scaffold_26774All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium1026Open in IMG/M
SRS047100_WUGC_scaffold_27619All Organisms → Viruses → Predicted Viral2131Open in IMG/M
SRS047100_WUGC_scaffold_37580All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces2844Open in IMG/M
SRS047100_WUGC_scaffold_37946All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium987Open in IMG/M
SRS047100_WUGC_scaffold_40605All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces2512Open in IMG/M
SRS047100_WUGC_scaffold_41781All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1269Open in IMG/M
SRS047100_WUGC_scaffold_45919All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis7716Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2066934C2066934__gene_96306F097525MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTF
C2070152C2070152__gene_97435F064819SMILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMISEEDLDIERSDLEDLMRDLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIIVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQEIEKCK
C2089186C2089186__gene_104286F043235VHDAVGEQLRVQAQIFSLSQALKHGIGDCPDTDLKRISIVDEFSTQLTDALLDRPDGSKRELHQGAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPCRLSSGLGIVTRHPEGAIALFIGLAHRDQCDIDRIDTIPKEIWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPYHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGETAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSVH
C2089852C2089852__gene_104525F084342IVSGQCGAKLFLLGGYLAVPIRRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE
C2096270C2096270__gene_107231F092232DDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGNQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVAAFIISINKYATKKFTLDNIYNTDFWICKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYSSAIALAEDAGLELTDDRSPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED
C2096488C2096488__gene_107340F045567VHTSTHRVEDALLRVDGDILTPRDGTHIVQTERVVVVLVSQEDRIDMIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
C2100962C2100962__gene_109776F053092MQSDQGLILCLTHALLVFGALILEPAEMEDPMDDHTVQLFGVLVAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS047100_WUGC_scaffold_13861SRS047100_WUGC_scaffold_13861__gene_12574F080165MKSIKILLLLLSLTACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLSYTFTRYILR
SRS047100_WUGC_scaffold_14800SRS047100_WUGC_scaffold_14800__gene_13644F074985MMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQQLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQIWLDQTFQKLHPVIVNHEGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID
SRS047100_WUGC_scaffold_14800SRS047100_WUGC_scaffold_14800__gene_13646F027205RTHVASRLIVSADDILKAVKDSEEFERKALSEARKRDRAEGKAPRETLYPNPDLKPGREIVLDYIKNPERRRAPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK
SRS047100_WUGC_scaffold_24347SRS047100_WUGC_scaffold_24347__gene_25203F063778MPETISEGAQQKLLQQLQNALGLVADADTSAHDVAAITHSAADGHQLTEVMLQQMTAIDAYLKNCQTSINDAIGNIEAIPLDPPPED
SRS047100_WUGC_scaffold_26774SRS047100_WUGC_scaffold_26774__gene_28265F101358MTEKHSASPAAKEETSAPLPPRQPEYLLTQPITTDGAPQERTPYPDAHIIPRRQDVPRYQWNVLRSSGQLDEGWVDVEIITEDGVTLVRMTKLVNRSNIHRLEKCVPLAVLQEQNIDFTNAYLQKAYGVMMEDGRLQPVADTTHTASQSSATEQETEVMPAQGGDTYEHLSGDSARQLVGSVAAKAS
SRS047100_WUGC_scaffold_27619SRS047100_WUGC_scaffold_27619__gene_29393F027205HVASRLIVSADDIMRAVKESEEFERKALAEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIRK
SRS047100_WUGC_scaffold_37580SRS047100_WUGC_scaffold_37580__gene_43521F063778PETISEGAQQQLLHQLQDALGLVKDADTSTHDVAAITQSAADGHQLTEVMLQQMMAARGYLKSCADQIECAISNIKAIPLDPPPED
SRS047100_WUGC_scaffold_37946SRS047100_WUGC_scaffold_37946__gene_44086F101358MTEKYSASPAAKEETSASLPPRQPEHLLTQPITTDGTPQERATHPDTHIIPKRQDVPRHRWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKASDGEVDNSPLVERVLGRAE
SRS047100_WUGC_scaffold_40605SRS047100_WUGC_scaffold_40605__gene_48370F063778PETISEGAKQKLFQELQDALGLVADADTSAHDVAAITHSAADGHQLTEVMLQQMTAVDAYLDNCQTSINDAISNIEAIPLDPPPED
SRS047100_WUGC_scaffold_41781SRS047100_WUGC_scaffold_41781__gene_50452F059076MTNKILLLGLLLGGVSINAQNINETNAAGKTKQKVGINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTISNVKGDWISNFDTGINYNKYAVAIMSATFKMPSPASGGIVMLRGGSNTPSVDHGGNKYGVTTAPATVLLQQHGANWAIYADYPNIGSYEFTSGSTAIGNLVNGTWVITL
SRS047100_WUGC_scaffold_45919SRS047100_WUGC_scaffold_45919__gene_59462F040149VADEGAKEFRWKVLIKEQGIPVLFIEVVAWYDGRVSSSEILSSFGIALEREPRLSPVWHHDSEDAIHDFIYDISVPKGHALTAVRERETVVMQLLNIHRMF
SRS047100_WUGC_scaffold_45919SRS047100_WUGC_scaffold_45919__gene_59463F055792MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLKTLQKEGYILFEGSMLPCEARRVDSRSPIKSLDLEPRIIGKTMKPIALPHVARLDEGIPLQRIGSLRDLLVTPDVSQADDLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA
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