NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000373

7000000373: Human stool microbial communities from NIH, USA - visit 1, subject 159490532



Overview

Basic Information
IMG/M Taxon OID7000000373 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0052917 | Ga0030508
Sample NameHuman stool microbial communities from NIH, USA - visit 1, subject 159490532
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size88398627
Sequencing Scaffolds2
Novel Protein Genes3
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct1h531
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074964Metagenome119N
F090484Metagenome108N
F099406Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
SRS016989_Baylor_scaffold_13233All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct1h536888Open in IMG/M
SRS016989_Baylor_scaffold_1629Not Available50251Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
SRS016989_Baylor_scaffold_13233SRS016989_Baylor_scaffold_13233__gene_25530F074964MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFIKFSLYSKVYKDNKVDKEKGIEAKTADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLIKETDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ
SRS016989_Baylor_scaffold_1629SRS016989_Baylor_scaffold_1629__gene_3307F099406MAEVGYNSKFEGLEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQGGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEESGGKVLESLGMVSTGVDSNYLDLSMFSGNSGTLDEGSFGKVLDAYNNKITLGKLAGNYYSLDYFLEGRDFEGVFELKIVLVSFLDANTGESVSESDIEIQVGTYTVTQDKAYKVLNNMVTLSNTMMSYLRFMSKAPRVVTTLANLPKDTHNIIANVASATNLSMTVSSEYVGREWQARVNNTTGTDITQPLPTSGQFQSMSGDSVVIPKNSFIELNIWYINDKLVIRVGEQA
SRS016989_Baylor_scaffold_1629SRS016989_Baylor_scaffold_1629__gene_3327F090484MIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRVTDSTFVARRYRVNGVQLTLGCGKVSLPKNRILIKIKKNEITNHEKVLDRIKEAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENVQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWALYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKTYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNINTTVDNDKELDGESVFKDIPLEELSFYNDTYLYSSSQYSSL

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