Sample 7000000388

Basic Information
IMG/M Taxon OID	7000000388 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052933 \| Ga0031298
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160765029
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000388 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0052933 | Ga0031298

Sample Name

Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160765029

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	85682741
Sequencing Scaffolds	19
Novel Protein Genes	23
Associated Families	23

Dataset Contents

Total Genome Size

85682741

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F045567	Metagenome	152	N
F046433	Metagenome	151	N
F054109	Metagenome	140	N
F054110	Metagenome	140	N
F055792	Metagenome	138	N
F066860	Metagenome	126	N
F071328	Metagenome	122	N
F080164	Metagenome	115	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F089057	Metagenome	109	N
F092232	Metagenome	107	N
F094007	Metagenome	106	N
F095633	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F099454	Metagenome	103	N
F103431	Metagenome	101	N
F103433	Metagenome	101	N
F103435	Metagenome	101	N
F105379	Metagenome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
C2616411	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	921	Open in IMG/M
C2619406	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	974	Open in IMG/M
C2620418	Not Available	993	Open in IMG/M
C2634345	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1447	Open in IMG/M
C2646515	Not Available	3263	Open in IMG/M
C2648433	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	4606	Open in IMG/M
C2649853	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	8417	Open in IMG/M
C2650021	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	9495	Open in IMG/M
C2650255	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	13801	Open in IMG/M
SRS020856_Baylor_scaffold_10819	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3945	Open in IMG/M
SRS020856_Baylor_scaffold_21397	All Organisms → cellular organisms → Bacteria	1824	Open in IMG/M
SRS020856_Baylor_scaffold_33083	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1305	Open in IMG/M
SRS020856_Baylor_scaffold_38950	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1099	Open in IMG/M
SRS020856_Baylor_scaffold_39392	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	913	Open in IMG/M
SRS020856_Baylor_scaffold_40604	Not Available	607	Open in IMG/M
SRS020856_Baylor_scaffold_41578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	2359	Open in IMG/M
SRS020856_Baylor_scaffold_43910	Not Available	586	Open in IMG/M
SRS020856_Baylor_scaffold_44238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula	27519	Open in IMG/M
SRS020856_Baylor_scaffold_45338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9713	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2616411	C2616411__gene_130787	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSFARGFITGIGGWVLALLAPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSALSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDKE
C2619406	C2619406__gene_132237	F095633	MRNYENSTEVGCREGLTEGELRTMGTLAMEATEELKKTTISKEAVLLGGVPFGSWDEFAKAVQEMAAHIYEPIPVKINTKRLIATAFLDDGGEMSVEEHSVPEEVFIDLSRTRCVVDEDRSHKSYEFTCPVLKKFPDGELYPIREAYVISAIDVNGSQEVDFKII
C2620418	C2620418__gene_132726	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAICLRYSSQLLLKKRRAIRRLGIEKKYVSAILRQYGIHYIEYGDNEHRVFFLDRGINLYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW
C2634345	C2634345__gene_140018	F032313	MYRFLILIFALTLMACDNNTPQEKPHEQEKYEVPVPKPQFDEVGERIWYGKTPAMRLDSTDYGAGLTSVFGMLTSKISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWVTTTEFTCRNGVILLHRQGINVNHVDTVNYVYDEVGNEIVLEGTGMRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEEK
C2646515	C2646515__gene_147796	F054109	MLGRPKSKKGVKVHTAFKIYPDDKARVQAMADKLDMSLSSYINRAVLEKVERDEKSEN
C2648433	C2648433__gene_149409	F081455	KLNLKFQQEREKRNAIEDSKALIRHLDPDYAEYELESLNPVEEIDAQNVEIIDAVDAIQQPLENKDAGIAVNFSQMINQPAIQEEVAKVVTSVPEQGEPKIKVVFPQNEHILGSYVDYDSFNKIKESNADTIIRSVRVLNFKMSDPNAVAAFNNFIMKFNPECDPNKRLKYELIRHQGREKDIVVRLSTVVNDVKYYADIYADLNKIDLDHHLISSAKKR
C2648433	C2648433__gene_149410	F080166	MEVTFNSILKRLGNDVRENFHTEYIVNSGSLTTNVKYRYRMKLSPKGEQTCVYIDWDNYDDLFNVLEESIKICDPENPRTPFKRTYSDKGDLLDIRCNSLQVKYQHLNDRFGNTIDLIPFVLVDEQSGLLTEAIRFRFNNELVYDVPISRLKGFRRFLMTYNPLLHAGAMARYMAMTPLLGSNRQNMMRS
C2648433	C2648433__gene_149412	F099453	MNRFDIIELAQQTITFVHSAFNGKVNALDPYTRLNFVAGYLDKKTNIARTTPYGCIYVSLEAFADTVEAYKFIDTDQIRNLALEIIIHELTHVDQLIDYRYIKFNNGYREEIERQCVKQSCQWILDNIQFIRSLGLVVIPEVYEERLIGLSDVTYSFKNPAVIAMSKLEHMIGKKFKEFNSNDIEIVYVDRLKNYYKIPVCVNRMYQNSQNLNDLGERLLNDKQYTIEYMEYGNSKLVIKITQGV
C2649853	C2649853__gene_150917	F092232	MNSQSKFIAEYNDRNRPKFNDRFFCKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYAEVQKLLIGEETPSISIKDSDLKLLKVTYYVGCTKDEETFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTATSAKTQSITLKTNSNAVKMLRNFVDLNTTKEESIRLAMFSVYLFDHKVTLFEYYLARFGWYDTLEKFNFQDIIRITDYDIDDPEYYTFAIANSHMKSPFYISAVKSFVDNDRILQSFIASFQRAIMLFATKKTTLDQIYTTQFWIQKLGFNFVSSETSTFTKGNAIIESLENSYDIPTKKRLRLPDEIKADIYSVLKWMACEFSSIRLKNNLDASTKRIRWSEYIAAMYIMLINIKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNHGVYEWNSFTNEEEPNVWDDNFSKMLNVYREEKGYTSAIMLAEDAGLELTDTRDPDAVAFDAQLLGQTIAKVARTREFETQLRPALINMEDSCSIYFEEA
C2650021	C2650021__gene_151208	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGVGPEKSYFQTTSYMVDLSPHINNLLVNISDLKNLGKITQLEPSGDNPEIAIHKPIVSVFNWDAEYVKACMNSLREYQIDDNIITRTEEFHNTDCYNELMAGSASTGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIVVNQSMLFLPY
C2650255	C2650255__gene_151619	F099452	MDKTYEELLQETLSKIYELKDLDNRDRGKALTIFIGERLNRELLLSSRHIFTLYSDIINLDDVSLLTDLRKTDWYKDWFTDDRNNANLINLSRFNFKTLARFEKEEYLRNVEQYDFEGVVQVDGYSLFDTLIEDKDVELFKLAAENILISHGFFDNTDYNFYDIPDEYMGDKEVCAYMCLLNIENMDFVDKKTLDTTVLYNIVKDRICGSIYFTLFDSLNKDTRTNAR
SRS020856_Baylor_scaffold_10819	SRS020856_Baylor_scaffold_10819__gene_13351	F094007	MKSKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDVNSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGHGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGTVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA
SRS020856_Baylor_scaffold_21397	SRS020856_Baylor_scaffold_21397__gene_26672	F046433	MIELPTSPNALSELSPVAPPKLLSQAQDASRGNLMVYVKADNYLGTETSDPSFMKSRYKTTEYEAINDFVQFIETTKRYLPDYMEDCAKELIDELAFLGMPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIGKSSKILFLDDWIVSGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGATYSVEACYRLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDELSLPALANIVRPYRNGKNFDGLSRFRQLLEKG
SRS020856_Baylor_scaffold_33083	SRS020856_Baylor_scaffold_33083__gene_41788	F045567	MVTEDVVHTSTHRVEDALLAVDGDILTPRDGTHIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKE
SRS020856_Baylor_scaffold_38950	SRS020856_Baylor_scaffold_38950__gene_49862	F033081	MAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRLKFSILAVGLIIMTIATIKMLLFVPGLNQSAVSLLTRGLETFLPTRWATATAWTVGMAGVFLMGNFTSYTKKQKSLQSLKATGCGMYNTLLLFALLEEQAFRSGSERWNWHERVRASVCFGLLHITNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL
SRS020856_Baylor_scaffold_39392	SRS020856_Baylor_scaffold_39392__gene_50533	F099454	MKASKLLWAVVMALTFVLTSCDRVTDEPTIEGKMNKFFDSQAQRKSFRVLTASGKPYNHKIDWHIIGILDPKSETYLTKKVDTLSNGDLKISYDWVAFIVRENKSVIDVEVQNNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK
SRS020856_Baylor_scaffold_40604	SRS020856_Baylor_scaffold_40604__gene_52509	F055792	LDSTSAVAHRILLLTTQLGESLLASLGTEDGVIAEAMVTGALERDLAIDCALEEVRPVFVDESDDGTEAGTTWSRYPLETLQKEGYILFEGSMLPCEARRVDPRCSVKSLDLEPRIIGEAIESVALPDVTRLDESITLQGIGSLRDLLMTPDVSETDHLQTSREEGTDLLQLMSIIARKYQLFHTFVS
SRS020856_Baylor_scaffold_41578	SRS020856_Baylor_scaffold_41578__gene_54155	F103431	MIDLDALIVGMLFFIQLFLQSIAWRVAIAHFLHAERGNAAAAAFDGAFREDIADCHAEDDNDKDAESQKEGFHVCIPEG
SRS020856_Baylor_scaffold_43220	SRS020856_Baylor_scaffold_43220__gene_57177	F103433	YVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVSVFAATVVAFFGAYWVNFMSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSAIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE
SRS020856_Baylor_scaffold_43910	SRS020856_Baylor_scaffold_43910__gene_58650	F080164	MVGLTLCAAPQVTLRERANAFPLITEKDASEIDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGILTVRVLVVGDTVAVHQDLMDDFAKHCRATLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKVEKPLLYKGQAGQLVLCEYYESHRGDLFLDVANAHPEIFGELCPVVDFHF
SRS020856_Baylor_scaffold_44238	SRS020856_Baylor_scaffold_44238__gene_59390	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVSRMYTEEEYKLTFPHKYKKGKTFKEKQLYKKESEYSSTKQHEVLLFLVRTYKGGE
SRS020856_Baylor_scaffold_45338	SRS020856_Baylor_scaffold_45338__gene_63395	F089057	MTNIIPIIAKKYNRKGDTSGSLKSLVSDLNCIDNVDDSLLFLSSIPRETKYTLDEVFDLITSDDIYIKIFGNVLTFLNMDLDYHRLLLNAIKSESYKIISIINESIPTPDLFLAKNNYECLSVALDKPFVIFDKILGMVVSQLLHTASSKEERIFGIFMTICIINREINKLASLCTGYLAITRDEVLVKDLMNESAMVAFQYMSTEDINNVVSDINSRSVLSRYLSNM
SRS020856_Baylor_scaffold_45356	SRS020856_Baylor_scaffold_45356__gene_63563	F103435	MKFVFCTEPIYQYYRAHLYDADKDKLDKQLLVEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLINKLTYQYLIDSPEFENIFSEILFNQSEREFYEFYKAIDRFYNGSEIFITVGNDDYSDMVTQMVCSVLRRTYGIRPQIIYDIDDVHSIRDNIDFSPEGAQIAYLQRHTYLALEAKSTVEPLRIWYPFDMNSYTNALE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000388: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160765029

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences