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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 7000000393 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052938 | Ga0031285 |
| Sample Name | Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765337473 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 117961358 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 16 |
| Associated Families | 15 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 4 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Minimicrobia → Candidatus Minimicrobia vallesae | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F032313 | Metagenome | 180 | N |
| F033081 | Metagenome | 178 | Y |
| F043235 | Metagenome | 156 | N |
| F047508 | Metagenome | 149 | N |
| F051213 | Metagenome | 144 | N |
| F053092 | Metagenome | 141 | N |
| F061926 | Metagenome | 131 | N |
| F064819 | Metagenome | 128 | N |
| F068942 | Metagenome | 124 | N |
| F076191 | Metagenome | 118 | N |
| F084342 | Metagenome | 112 | N |
| F089055 | Metagenome | 109 | Y |
| F095633 | Metagenome | 105 | N |
| F097490 | Metagenome | 104 | N |
| F103431 | Metagenome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C2809315 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum | 7606 | Open in IMG/M |
| C2809317 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena | 7607 | Open in IMG/M |
| C2810049 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 10074 | Open in IMG/M |
| SRS019327_WUGC_scaffold_25808 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Minimicrobia → Candidatus Minimicrobia vallesae | 937 | Open in IMG/M |
| SRS019327_WUGC_scaffold_27552 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 17295 | Open in IMG/M |
| SRS019327_WUGC_scaffold_36395 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1743 | Open in IMG/M |
| SRS019327_WUGC_scaffold_36451 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 969 | Open in IMG/M |
| SRS019327_WUGC_scaffold_39896 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae | 1684 | Open in IMG/M |
| SRS019327_WUGC_scaffold_4409 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 1001 | Open in IMG/M |
| SRS019327_WUGC_scaffold_48256 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria | 46587 | Open in IMG/M |
| SRS019327_WUGC_scaffold_57371 | Not Available | 1580 | Open in IMG/M |
| SRS019327_WUGC_scaffold_58348 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas | 1671 | Open in IMG/M |
| SRS019327_WUGC_scaffold_61771 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 5850 | Open in IMG/M |
| SRS019327_WUGC_scaffold_64093 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 1026 | Open in IMG/M |
| SRS019327_WUGC_scaffold_67490 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides | 3307 | Open in IMG/M |
| SRS019327_WUGC_scaffold_71760 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 10320 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C2809315 | C2809315__gene_199514 | F097490 | MFLKTQKMNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPFVDAMADHGLNHVTSEMIEGQMHYKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKTIKYKYNNEKEYKIDEFYTVFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM |
| C2809317 | C2809317__gene_199528 | F061926 | MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCILNYFYILPEKPQIEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS |
| C2810049 | C2810049__gene_199941 | F076191 | MKIIAENPAEEALLWRIKALSDELVNQDNRSTDMPMWTILDNNKAGKDYGAVTYFTGKAAERHIEENDHHYDNPTIYIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA |
| SRS019327_WUGC_scaffold_25808 | SRS019327_WUGC_scaffold_25808__gene_37327 | F095633 | MRNYENSTEVGCREGLTEGELRTMGTLAMEATEELKKTTISKEAVLLGGVPFNSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDRGEMSVEENSVPEEVFIDLSRTRCVVNMDRSHKSYKFTCPVLKKYPSGELYPIREAYVISAIDVNGSQEVDFKVI |
| SRS019327_WUGC_scaffold_27552 | SRS019327_WUGC_scaffold_27552__gene_39900 | F047508 | MLGHRLVEGRVKYPYLRRIWEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGIAEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELIPSSP |
| SRS019327_WUGC_scaffold_36395 | SRS019327_WUGC_scaffold_36395__gene_54459 | F043235 | MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVNTLIQISGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHMEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMANNVLLPGSAH |
| SRS019327_WUGC_scaffold_36451 | SRS019327_WUGC_scaffold_36451__gene_54550 | F033081 | MAWLFGRAMPQDTRPTFVWPRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLFVPGLNQSAVSLLTRGLETFLPTRWATATAWTVGMAGVFLMGDLTNYTPSQKILHKIKATRYEVYNTILFLALLEEQAFRSGSERWNWRERVRASVCFGLLHIMNIWYNFATGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL |
| SRS019327_WUGC_scaffold_39896 | SRS019327_WUGC_scaffold_39896__gene_60007 | F084342 | LRGYLAIPIRRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWVHRRHILGICKEE |
| SRS019327_WUGC_scaffold_4409 | SRS019327_WUGC_scaffold_4409__gene_5553 | F089055 | KTPEIEARKKEVRKKLDTIFSDAERRDNSKVNPELGKTAFDVANIPNNEAVDLCNQALGGYGKSLDHINNGPLEIVQTIGISLQRLREYKTEGSCR |
| SRS019327_WUGC_scaffold_48256 | SRS019327_WUGC_scaffold_48256__gene_73749 | F103431 | MIDFDALIVGMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGAFGENIADCHAEDDNDKNAESKEEGFHVCIPEG |
| SRS019327_WUGC_scaffold_57371 | SRS019327_WUGC_scaffold_57371__gene_88857 | F032313 | EQEKHEVPVPKSKPQFDEVGERIWYGQTPAMRLDSTDYGVGLTPVLGMRTSRISKERFDSLFKQTVWEIKDIRAVETDFSLAKKNPIIFGHSITKEFTCRNGVILLHKQGVGVNHVDTVNYVYDDNEIVLEGTGTRWYVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEEK |
| SRS019327_WUGC_scaffold_58348 | SRS019327_WUGC_scaffold_58348__gene_90498 | F051213 | MALTFVFTSCDPFSKNEPIVEGDVDKYFDSNAQRKSFRVLTAEGKPYNHKVDWHIVGIMVPYSDTYLTKKVDTLSNGDLKISHDWVSFTVRENKSIIDVEVQKNETGKERSVTFRPSNSYKQAYLPKIRVIQRAN |
| SRS019327_WUGC_scaffold_61771 | SRS019327_WUGC_scaffold_61771__gene_96851 | F053092 | MQSDQGLILCLTHALLVLGALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK |
| SRS019327_WUGC_scaffold_64093 | SRS019327_WUGC_scaffold_64093__gene_101263 | F033081 | MAWLFNRVMPTDSRPVFVWPKLVAAIEDTGNFGKRWLTAIATGLIIVTIATIKALLMIPGLDSSVVGLLTSIFETFLPARWATGAAWIVGTTGVFLMGNFTSYTKKQKSLQSLKATGCGMYNTLLLFALLEEQAFRSGSERWNWRERVRASVCFGLLHVTNIWYSFAAGIALSVTGFGFLMVYLWYYRKYRSQIIATAAAATVHALYNAIAISLIAVVVAVYLAIDIAKLL |
| SRS019327_WUGC_scaffold_67490 | SRS019327_WUGC_scaffold_67490__gene_108741 | F068942 | MIRKILSLPTLAFCFTLGSAFFAGCNEDYIKDTKVRWSNVKNPEYGDPINITLKAEGETFTTMGDYPWISFRSDVSTLDTFTSHSFSEADKDTAYYKDIVIYLTRNKRERTTTLKLVAPPNRTQQPKQFDFSIGVTPLGTYIFKVRQPALPAKAQ |
| SRS019327_WUGC_scaffold_71760 | SRS019327_WUGC_scaffold_71760__gene_122815 | F064819 | MILKDNQGKDRIKFLDIVRLNKEEPVFVKMKVRISTETMVSEEDLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQKLKKI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |